File size: 914 Bytes
c000eca | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | #!/bin/bash
# check if R is installed
which R > /dev/null
if [[ $? -ne 0 ]]; then
echo "R is not installed!"
exit 1
fi
which Rscript > /dev/null
if [[ $? -ne 0 ]]; then
echo "Rscript is not installed!"
exit 1
fi
Rscript -e '
install.packages(
c(
"dplyr",
"ggbreak",
"ggplot2",
"ggthemes",
"jsonlite",
"kableExtra",
"knitr",
"openxlsx",
"optparse",
"patchwork",
"plotly",
"plyr",
"pracma",
"RColorBrewer",
"readr",
"safetensors",
"stringr",
"this.path",
"tidyverse"
)
)
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
install.packages(
"ggmagnify",
repos = c(
"https://hughjonesd.r-universe.dev",
"https://cloud.r-project.org"
)
)
'
|