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Nov 5

Sparse Readout Prism: Explaining Logit-Lens Scores in Features Instead of Tokens

A language model's prediction of its next token develops across layers, and lens methods track this process by decoding intermediate hidden states into tokens. But a lens reading reflects both the hidden state and the readout (the unembedding matrix) used to decode it. Many lenses are fit on a corpus, and we show that two lenses differing only in their fitting corpus can report different tokens for the same hidden states. We call this dependence corpus conditionality. To examine readout structure independently of the fitting corpus, we introduce Sparse Readout Prism (SRP), which decomposes the readout using only its weights and expresses any token logit or logit difference as a sum of contributions from sparse readout features. This reveals readout features as a new unit of analysis for lens readings, exposing structure that token identities can obscure and enabling comparisons across tokens, contexts, layers, and lenses. Replacing the original readout with SRP's sparse approximation reconstructs 8.9-17.3 percentage points more of the tested logit differences than the strongest of six baselines built on geometric relations among readout rows. Ablating features shifts logit differences in proportion to their SRP contributions. Although token readings vary with the fitting corpus, the dominant readout feature remains stable. Because SRP uses no corpus in its construction, it provides a control independent of the fitting corpus for lens analyses.

  • 4 authors
·
Aug 31 2

A Few Neurons Reveal When LLMs Misuse Tools: Sparse Detection and Selective Steering for Reliable Tool Use

Agentic LLMs exhibit three consequential tool-use failures: invalid arguments (validity), unnecessary calls (over-calling), and omitted calls when tools are needed (missing). We find that a small, failure-specific set of MLP neurons could distinguish such failures with linearly separable decision boundaries. Building on this observation, we introduce PRISMS (Probing Representations In Support of Monitoring and Steering), a closed-loop framework that shares a failure-specific neuron basis between sparse detection and activation steering. PRISMS selects contribution-critical MLP neurons and fits an L1-regularized detector on their activations. Across six models from the Qwen3, Llama, and Gemma families, over-calling and missing are detected at the pre-generation prompt boundary with ROC-AUC 0.90-1.00, while validity is detected from the generated tool-call span with ROC-AUC 0.86-0.90. These results are achieved with highly sparse readouts: only 1-2 MLP neurons for missing, 2-16 for over-calling, and approximately 128 for validity. These sparse detectors match or outperform dense residual-stream baselines using 23-627 times fewer features. The shared neuron basis also supports bidirectional control over tool-calling behavior, suppressing unnecessary calls and eliciting omitted ones. PRISMS therefore gates intervention on predicted failure risk to mitigate the collateral effects of unconditional steering. Across all six models, PRISMS reduces pooled over-calling rate by 80% (from 0.131 to 0.026) while increasing tool-required accuracy by 14.2 percentage points (from 0.689 to 0.831). PRISMS thus provides lightweight failure detection and selective intervention across model families.

  • 4 authors
·
Jul 30

The Evolution of Attention in Large Language Models: Mechanisms, Trade-offs, and Emerging Trends

Self-attention gives LLMs fine-grained, query-dependent access to context, but dense token interactions incur quadratic prefill cost and a key--value cache growing with context length. Research thus spans explicit-memory compression, sparse access, recurrent state construction, structured state dynamics, and heterogeneous mechanism composition. This survey analyzes these developments as model-internal contextual memory. We introduce a five-dimensional lens---Memory Representation, Memory Update, Access, Readout, and Integration---describing what is represented, how it changes, what is query-eligible, how it is read, and how readouts form outputs. This lens compares overlapping research lines without imposing one computational model. We reconstruct mechanism-level developments and architectural adoption using 59 release-level records from 14 major model lineages and 11 high-performing open-weight endpoints. First, explicit-memory and recurrent-state methods retain distinct interfaces but increasingly control overlapping memory functions. Second, heterogeneous architectures increasingly coordinate across network depth: layer-wise composition distributes complementary memory processing across representational stages, while cross-layer reuse carries selected memory and routing artifacts forward. Depth thus becomes a dimension along which contextual memory is constructed and managed. Third, these developments motivate a stateful multidimensional memory-routing hypothesis: persistent memory is organized across temporal scope, network depth, substrate type, and representation granularity, while coordinated Sparse Write and Sparse Read determine what is maintained and what contributes to each query. Overall, efficient sequence architecture design increasingly concerns the organization, lifecycle, and selective use of contextual memory rather than an isolated Attention operator.

  • 6 authors
·
Sep 29 2

Large Graph Convolutional Network Training with GPU-Oriented Data Communication Architecture

Graph Convolutional Networks (GCNs) are increasingly adopted in large-scale graph-based recommender systems. Training GCN requires the minibatch generator traversing graphs and sampling the sparsely located neighboring nodes to obtain their features. Since real-world graphs often exceed the capacity of GPU memory, current GCN training systems keep the feature table in host memory and rely on the CPU to collect sparse features before sending them to the GPUs. This approach, however, puts tremendous pressure on host memory bandwidth and the CPU. This is because the CPU needs to (1) read sparse features from memory, (2) write features into memory as a dense format, and (3) transfer the features from memory to the GPUs. In this work, we propose a novel GPU-oriented data communication approach for GCN training, where GPU threads directly access sparse features in host memory through zero-copy accesses without much CPU help. By removing the CPU gathering stage, our method significantly reduces the consumption of the host resources and data access latency. We further present two important techniques to achieve high host memory access efficiency by the GPU: (1) automatic data access address alignment to maximize PCIe packet efficiency, and (2) asynchronous zero-copy access and kernel execution to fully overlap data transfer with training. We incorporate our method into PyTorch and evaluate its effectiveness using several graphs with sizes up to 111 million nodes and 1.6 billion edges. In a multi-GPU training setup, our method is 65-92% faster than the conventional data transfer method, and can even match the performance of all-in-GPU-memory training for some graphs that fit in GPU memory.

  • 8 authors
·
Mar 4, 2021

Where Activation Sparsity and KV-Cache Sparsity Cross in LLM Decoding

At each step, decoding one sequence with a large language model rereads the projection weights, whose traffic is fixed, and the key-value (KV) cache, whose traffic grows with context. Activation sparsity trims the first term and KV-cache sparsity the second, yet their reported speedups are hard to compare because each depends on context length and on the dense attention kernel it is measured against. We derive a byte crossover, the context length at which the two savings are equal, together with ideal speedup bounds for each branch and for their composition, from model dimensions and keep ratios alone. We then time both branches and their composition from 2K to 128K tokens on two GPUs after a dense prefill of real text, with dense and sparse modes reading the cache through the same split-K attention kernel. The projection branch leads at short context and the KV branch at long context, with speedups that follow their byte bounds up to fixed kernel costs. Adding these costs, measured in separate sweeps, lets the byte account predict the measured crossings of three keep-ratio pairs, a second model, and a second GPU to within 4.1K tokens. Timing the dense baseline with masked instead of split-K attention inflates the apparent speedup of the same KV policy about fivefold. An attention-scored KV selection answers the same passkey and multi-key placements as dense decoding up to 127K tokens, whereas a KV window misses most of them. Under matched perplexity budgets, activation sparsity composed with this selection decodes 14 to 26% faster than the best single branch on both GPUs. Code is available at https://github.com/js-lee-AI/ByteCross.

  • 5 authors
·
Sep 26

PDF-WuKong: A Large Multimodal Model for Efficient Long PDF Reading with End-to-End Sparse Sampling

Document understanding is a challenging task to process and comprehend large amounts of textual and visual information. Recent advances in Large Language Models (LLMs) have significantly improved the performance of this task. However, existing methods typically focus on either plain text or a limited number of document images, struggling to handle long PDF documents with interleaved text and images, especially in academic papers. In this paper, we introduce PDF-WuKong, a multimodal large language model (MLLM) which is designed to enhance multimodal question-answering (QA) for long PDF documents. PDF-WuKong incorporates a sparse sampler that operates on both text and image representations, significantly improving the efficiency and capability of the MLLM. The sparse sampler is integrated with the MLLM's image encoder and selects the paragraphs or diagrams most pertinent to user queries for processing by the language model. To effectively train and evaluate our model, we construct PaperPDF, a dataset consisting of a broad collection of academic papers sourced from arXiv, multiple strategies are proposed to generate automatically 1M QA pairs along with their corresponding evidence sources. Experimental results demonstrate the superiority and high efficiency of our approach over other models on the task of long multimodal PDF understanding, surpassing proprietary products by an average of 8.6% on F1. Our code and dataset will be released at https://github.com/yh-hust/PDF-Wukong.

  • 9 authors
·
Oct 8, 2024

TriSplat: Simulation-Ready Feed-Forward 3D Scene Reconstruction

Sparse-view 3D reconstruction is increasingly addressed with feed-forward splatting networks that predict explicit primitives directly from images. Yet most existing methods remain centered on Gaussian primitives and expose surfaces only indirectly: extracting a usable mesh for downstream simulation, physics reasoning, or embodied interaction still requires expensive post-hoc steps that break the feed-forward promise. This limitation is especially pronounced in pose-free settings, where scene structure and camera parameters must be estimated jointly from sparse observations. We present TriSplat, a feed-forward reconstruction network that represents scenes with oriented triangle primitives and directly exports simulation-ready mesh scenes from a single forward pass. Given input images, the network predicts local 3D point maps, triangle attributes, camera poses, and optional intrinsics. Rather than regressing triangle orientation as an unconstrained latent variable, our approach constructs geometry normals from the predicted point maps, refines them with an image-conditioned normal head, and converts them into stable local frames for triangle parameterization. A mono-normal bootstrap schedule further stabilizes early training, while opacity and blur scheduling progressively sharpens the learned surface representation for direct mesh extraction. Experiments on RealEstate10K and DL3DV show that this representation produces more geometry-faithful reconstructions than Gaussian feed-forward baselines while maintaining competitive novel-view rendering quality. Because the rendering primitives are themselves surface triangles, the output can be directly ingested by physics engines, collision detectors, and standard rendering pipelines without any conversion, making it a practical simulation-ready solution for feed-forward 3D scene reconstruction.

Representation Redistribution in Sparse Autoencoders

Sparse autoencoders (SAEs) decompose language model activations into sparse features, but prompt transformations designed to preserve the underlying request can redistribute activity across them. A feature change observed on one transformed prompt need not recur, and even a recurring change need not affect a downstream computation. We introduce the redistribution sensitivity score (RSS), which identifies large feature responses that recur in a consistent direction, and evaluate the resulting supports on variants excluded from selection. Across 27 pretrained SAEs spanning eight language models, the tested prompt transformations produce a reproducible redistribution profile on these excluded variants. We then separate recurring representation change from signed readout contribution and decision failure. For a fixed linear readout, an exact decomposition shows how response magnitude, readout coefficients, directional alignment, and the clean margin determine downstream consequences. In two frozen safety readouts, combining RSS support erosion with the full clean margin yields recurrent failure AUROCs of 0.935 and 0.958 using median supports of 20 and 19 features, compared with 0.965 and 0.964 using full erosion. RSS therefore provides a way to identify recurring sparse representation changes and quantify their contribution to a downstream readout without equating representation change with failure. Code is available at https://github.com/OpenSAE/Redistribution-Sensitivity-Score

OpenSAE OpenSAE
·
Oct 14 2

Connecting the Dots: A Machine Learning Ready Dataset for Ionospheric Forecasting Models

Operational forecasting of the ionosphere remains a critical space weather challenge due to sparse observations, complex coupling across geospatial layers, and a growing need for timely, accurate predictions that support Global Navigation Satellite System (GNSS), communications, aviation safety, as well as satellite operations. As part of the 2025 NASA Heliolab, we present a curated, open-access dataset that integrates diverse ionospheric and heliospheric measurements into a coherent, machine learning-ready structure, designed specifically to support next-generation forecasting models and address gaps in current operational frameworks. Our workflow integrates a large selection of data sources comprising Solar Dynamic Observatory data, solar irradiance indices (F10.7), solar wind parameters (velocity and interplanetary magnetic field), geomagnetic activity indices (Kp, AE, SYM-H), and NASA JPL's Global Ionospheric Maps of Total Electron Content (GIM-TEC). We also implement geospatially sparse data such as the TEC derived from the World-Wide GNSS Receiver Network and crowdsourced Android smartphone measurements. This novel heterogeneous dataset is temporally and spatially aligned into a single, modular data structure that supports both physical and data-driven modeling. Leveraging this dataset, we train and benchmark several spatiotemporal machine learning architectures for forecasting vertical TEC under both quiet and geomagnetically active conditions. This work presents an extensive dataset and modeling pipeline that enables exploration of not only ionospheric dynamics but also broader Sun-Earth interactions, supporting both scientific inquiry and operational forecasting efforts.

  • 11 authors
·
Nov 18, 2025

Read, Highlight and Summarize: A Hierarchical Neural Semantic Encoder-based Approach

Traditional sequence-to-sequence (seq2seq) models and other variations of the attention-mechanism such as hierarchical attention have been applied to the text summarization problem. Though there is a hierarchy in the way humans use language by forming paragraphs from sentences and sentences from words, hierarchical models have usually not worked that much better than their traditional seq2seq counterparts. This effect is mainly because either the hierarchical attention mechanisms are too sparse using hard attention or noisy using soft attention. In this paper, we propose a method based on extracting the highlights of a document; a key concept that is conveyed in a few sentences. In a typical text summarization dataset consisting of documents that are 800 tokens in length (average), capturing long-term dependencies is very important, e.g., the last sentence can be grouped with the first sentence of a document to form a summary. LSTMs (Long Short-Term Memory) proved useful for machine translation. However, they often fail to capture long-term dependencies while modeling long sequences. To address these issues, we have adapted Neural Semantic Encoders (NSE) to text summarization, a class of memory-augmented neural networks by improving its functionalities and proposed a novel hierarchical NSE that outperforms similar previous models significantly. The quality of summarization was improved by augmenting linguistic factors, namely lemma, and Part-of-Speech (PoS) tags, to each word in the dataset for improved vocabulary coverage and generalization. The hierarchical NSE model on factored dataset outperformed the state-of-the-art by nearly 4 ROUGE points. We further designed and used the first GPU-based self-critical Reinforcement Learning model.

  • 3 authors
·
Oct 7, 2019

COBS: Cumulant Order Block Sparse Attention

Block sparse attention is a hardware friendly way to alleviate the key-value (KV) cache read bottleneck in large language models (LLMs). However, it is not prevalent among leading open-weight LLMs, which rely instead on dense attention or fine-grained selection, thereby motivating our analysis. We study DeepSeek's Native Sparse Attention (NSA) as a representative method, whose three-branch design lets us isolate block selection, the most challenging and consequential stage. We formalize selection and reduce it to ranking blocks by a single quantity, the attention mass: the sum of a block's attention scores. We show that if selection retrieves the blocks with the largest attention mass, block sparse attention can match the quality of dense attention. However, computing the exact attention mass requires reading every key, so the problem of block selection ultimately reduces to approximating this mass from a compact summary instead of the full keys. Via a cumulant expansion, we show why existing methods falter: their selection strategies attempt to estimate the attention mass, but are confined to a first-order approximation. Therefore, we propose COBS (Cumulant Order Block Sparse Attention), an attention method that builds on NSA, incorporating a novel selector that stores a compressed second-order statistic per block. On the 32k RULER long-context retrieval benchmark, COBS raises the NSA baseline's mean score from 0.2999 to 0.8195, approaching dense attention at 0.9040 and closing about 86% of the gap, while using only 1.21x the KV cache read traffic of the NSA baseline and 15.15x less read traffic than dense. The same model preserves short-context behavior and attains lower position-wise negative log-likelihood (NLL) than dense attention in our comparison.

  • 5 authors
·
Jul 9

Sparse Weight Decomposition for Efficient Circuit Extraction

Dense pretrained transformers do not naturally expose interpretable units for circuit extraction. Existing approaches obtain such units by learning auxiliary sparse representations or training sparse models, incurring substantial additional computation while potentially introducing a fidelity gap between the representation being analyzed and the original pretrained model. We propose Sparse Weight Decomposition (SWD), which reparameterizes pretrained linear projections by factorizing each weight matrix into two sparse factors whose shared intermediate coordinates serve as individually addressable circuit units. Without training a separate replacement network, this parametric representation supports the same scoring, selection, and ablation circuit extraction workflow used for methods that learn sparse features. Across single-matrix replacements, SWD matches the held-out fidelity achieved by Transcoder and other strong baselines while using less than 1% of the data that those baselines use to train their replacements. For matched replacement fidelity, SWD reaches the same circuit sufficiency and necessity targets with fewer active read/write edges and selected units across tasks on GPT-2, Qwen2.5, and Qwen3.5-27B. We further show that SWD remains effective for full-model replacement of all attention and MLP weight matrices after fine-tuning the nonzero factor values. Finally, SWD also features a zero-data variant, allowing broader use of mechanistic interpretability analysis (e.g., per-step analysis).

  • 7 authors
·
Aug 3

Understanding On-Policy Distillation: A Mechanistic Interpretability Perspective via Sparse Crosscoders

On-policy distillation (OPD) is a widely adopted post-training technique for LLM reasoning. It is commonly believed to transfer knowledge from a stronger teacher, yet what OPD actually distills into the student's internal representations remains unclear. We study this question with sparse crosscoders, which learn one feature dictionary shared by the student before and after OPD and the teacher. Standard crosscoder analyses, however, identify model-specific features but cannot tell how a model's use of its features changes, since all models are encoded into one set of feature activations. We therefore propose the swap readout, which reads each student checkpoint's feature activations on its own, measuring how training changes the student's use of each feature, even for checkpoints unseen by the crosscoder. Across three OPD settings, we find that OPD neither creates features nor passes on the teacher's own, and leaves the firing rates of over 98% of the student's frequently used features within 20%. We further examine the SFT warm-up on the teacher's rollouts that commonly precedes OPD and makes it more effective. Rather than adding features, the warm-up reweights the shared ones in two ways. First, it already raises and lowers many of the features that OPD later raises and lowers, doing part of OPD's work in advance. Second, it changes features that OPD alone would not, notably those for conversation format, reasoning style, and mathematical notation, and these changes persist through OPD. Imposing this reweighting on a directly distilled student's features, without changing its weights, brings its accuracy close to that of the warmed-up student, whereas the same change on shuffled features does not. Together, these findings suggest that OPD reweights existing features rather than acquiring new ones: the student learns from the teacher how to use the features they already share.

HiSparse: Scaling Sparse-Attention Decoding with Hierarchical KV Cache Management

Top-k sparse attention makes long-context LLM decoding cheap to compute: each step reads only a few thousand selected KV entries rather than the full context. Serving systems, however, typically keep the entire KV cache in GPU HBM so that every position stays selectable, so a request's memory bill still grows with its full context length--decoding hits a capacity wall long before it runs out of compute, and a context whose KV cache exceeds HBM cannot be served at all. We present HiSparse, an exact, indexer-agnostic hierarchical KV cache for sparse-attention serving. HiSparse keeps each request's full KV history in host memory and bounds its decode footprint with a small, fixed-size GPU cache; a fused CUDA kernel resolves each layer's selections--hit detection, LRU replacement, and host-to-device fetches--inside the decode CUDA graph; and, for models that share selections across layers, exact layer-wise prefetching hides roughly half of the remaining miss overhead. Because only KV placement changes, model outputs are unchanged. HiSparse is merged into upstream SGLang and evaluated across three sparse-attention families (DSA, NSA, and Quest) on H200, B200, and GH200 platforms: it improves peak generation throughput by up to 4.7x on long-context workloads while preserving comparable per-token latency and reducing time-to-first-token at high load--and a no-IO oracle shows the resolution mechanism itself adds no measurable per-token cost, leaving host-device IO as the only price of bounded residency.

  • 6 authors
·
Aug 6

Generative modeling of intrinsically disordered protein regions by reinforcing sparse autoencoder features

Intrinsically disordered protein regions (IDRs) play central roles in cellular processes such as transcriptional regulation, signal transduction, and subcellular localization, yet their functional design remains challenging. Structure-based design methods do not readily apply to IDRs, and existing protein language models are trained on full-length protein sequences, thus learning a prior that is biased towards folded domains. Here, we present IDiom, an autoregressive protein language model trained on IDiom-DB, a dataset of 54 million predicted IDRs curated from the AlphaFold Database. IDiom generates diverse sequences that recapitulate the composition, patterning, motifs, and predicted disorder of natural IDRs. To control function-associated sequence patterns, we also introduce reinforcement learning with sparse autoencoder features (RL-SAE), a post-training method that rewards the generation of sequences that activate specified feature sets. Across eight IDR design tasks, RL-SAE sequences activate, on average, 90% of 30 targeted features, compared to 24% for activation steering. We demonstrate that RL-SAE improves the predicted subcellular localization and transcriptional activity of generated IDRs compared to steering and supervised fine-tuning, and enables features associated with distinct biological functions to be combined within individual sequences. Thus, IDiom and RL-SAE enable interpretable and composable IDR design through explicit control of function-associated sequence features. More broadly, RL-SAE could extend to other protein design settings where interpretable features provide useful design targets. Code is available at https://github.com/rotskoff-group/idiom.

  • 10 authors
·
Sep 30

Learning to Read Out: Unembedding Dynamics in Language Model Pretraining

When does a language model acquire a capability? Developmental studies usually answer this by tracking when models start producing the correct token. But that prediction passes through the unembedding matrix, or readout, which is itself still being learned during pretraining. We show that a model's hidden states can encode task information before its own readout expresses it, so timelines read from outputs conflate what the model encodes with what its readout expresses. To track the readout directly, we introduce parameter-trajectory crosscoding, which fits one sparse dictionary to every token's readout row at every checkpoint. Unlike crosscoders on activations, it needs only checkpoint weights. We use it to locate a narrow early window, 0.4-1.1% of the way through Pythia's pretraining, in which the readout reorganizes and WordNet word categories become decodable from its rows. By then, linear probes on the hidden states already decode task information that the model's own outputs do not yet show. To test whether such gaps depend on how fast the readout learns, we pretrain small models from scratch that differ only in the readout's learning rate. We find that raising it makes the readout develop earlier and the gap close sooner, with little effect on final loss. Together, these results imply that early in training, where many developmental transitions are dated, a behavioral date can reflect when the readout learns to express task information and not when the model learns it.

  • 6 authors
·
Oct 13 2

ContextMaster: Interactive Multi-Shot Video Creation via Fixed-Budget Sparse Context Routing

Recent video models increasingly support generation, reference conditioning, and editing within a single model, yet typically expose them as separate operations over fixed inputs. Practical creation unfolds across multiple shots, requiring one model to generate from text, follow a reference, or edit source footage while maintaining shared history. We formalize this setting as interactive multi-shot video creation (IMVC) and introduce ContextMaster, a unified model with a role-aware context representation for these operations. An interactive model must retain access to an expanding history without allowing the context read cost at each denoising step to grow. ContextMaster combines reusable clean context states with fixed budget sparse context routing and uses ConstraintSink to keep task constraints visible. To address the dual challenges of sparse context access and inference with few denoising steps, we propose a two-stage privileged context distillation framework, which transfers full context behavior from a dense teacher through consistency distillation and then refines deployment rollouts with distribution matching. Experiments on the three primitive tasks demonstrate improved task fulfillment and consistency across shots over specialized baselines. User studies further validate flexibly composed workflows, while the model reaches 16 FPS on a single GPU.

CRISP: Cliff-awaRe Input-adaptive Sparse Prefilling with Structural-Mass-Motivated Routing

The attention prefilling phase of long-context LLM inference scales quadratically, making self-attention a severe computational bottleneck. Traditional sparse attention methods mitigate this through fixed patterns or offline profiling, but lack the flexibility to adapt to input-dependent attention structure. Recent dynamic methods address this by routing heads to sparse patterns in real-time, but rely on indirect routing proxies with overhead and budget allocation mechanisms that overlook the post-softmax mass hierarchy. We present CRISP (Cliff-awaRe Input-adaptive Sparse Prefilling), which identifies and addresses two structural challenges in this dynamic routing paradigm. First, we show that the routing decision can be read directly off the structure of the proxy attention map. We replace the Jensen-Shannon Divergence (JSD) routing with C_struct, a structural proxy that measures mass at Vertical-Slash compatible positions and reproduces JSD's routing decisions while eliminating both the pooled matmul and subsequent KL divergence overhead. Second, we formalize the post-softmax mass cliff and demonstrate theoretically that strictly cumulative coverage thresholds accumulate O(n) background noise at long contexts. CRISP navigates this via a sink-aware threshold grounded in the noise floor. Empirically, across InfiniteBench, RULER and LongBench on two model families, CRISP is the strongest sparse method overall and matches or exceeds exact dense attention on retrieval-heavy benchmarks, recovering up to +28.0 pp on retrieval tasks over baselines and achieving up to a 5.30x attention speedup at 512k tokens, driven primarily by our O(n) noise elimination during selection while preserving structural integrity.

  • 7 authors
·
Aug 31 2

Harnessing Selective State Space Models to Enhance Semianalytical Design of Fabrication-Ready Multilayered Huygens' Metasurfaces: Part I - Field-based Semianalytical Synthesis

Planar metasurfaces can profoundly control electromagnetic scattering. At microwave frequencies, such devices are typically implemented using multilayer cascades of patterned metallic sheets, whose design often requires time-consuming full-wave optimization. Here, we extend analytical models originally developed for sparse loaded-wire metagratings to accurately describe densely packed Jerusalem-cross meta-atoms embedded in standard printed circuit board (PCB) dielectric stacks. The model captures both near- and far-field coupling within and between layers, enabling efficient prediction of the dual-polarized response. Using this framework, we identify highly transmissive meta-atoms whose phase is controlled by the leg lengths of the Jerusalem crosses (microscopic design stage). This (phase)-(leg-length) "lookup table" allows rapid synthesis of Huygens' metasurfaces (macroscopic design stage), demonstrated through a full-wave-validated metalens exhibiting low-reflection beam manipulation. Notably, we implement a judicious scaling method to further extend the model to predict wideband meta-atom responses. In the companion paper (Part II), a hybrid machine-learning approach leverages this semianalytical framework to enhance accuracy without requiring the conventional exhaustive full-wave training, enabling ultrafast inverse design across the full parameter space. Overall, the presented methodology -- the standalone semianlytical scheme (Part I) and the machine-learning enhanced version (Part II) -- establishes an effective open-source toolkit for versatile, rapid, and highly accurate synthesis of fabrication-ready dual-polarized transmissive Huygens' meta-atoms and metasurfaces.

  • 7 authors
·
Mar 4

An Introduction to Sparse Identification of Nonlinear Dynamics for Engineering Applications

Many engineering problems involve phenomena whose governing equations are poorly characterized or only partially known. Surrogate modeling techniques such as neural networks can capture the behavior of these systems, but they typically demand large training datasets that are difficult to obtain in engineering contexts and yield models with limited physical interpretability. The Sparse Identification of Nonlinear Dynamics (SINDy) method addresses both limitations by performing sparse regression over libraries of candidate nonlinear terms, recovering interpretable governing equations from comparatively small datasets. Although SINDy has been demonstrated extensively on canonical benchmark systems, its application to practical engineering problems is less widely documented. This tutorial introduces the SINDy method and progressively builds toward its main extensions, from noise-robust weak-form and ensembling-based variants to constrained and parametrizable formulations. The paper and the accompanying tutorial (available at https://github.com/paullililili/SINDy4Engineers) is organized in three parts: the first introduces the standard SINDy algorithm and progressively extends it, inviting readers without prior knowledge to follow each step and adapt the methods to their own problems; the remaining two parts present detailed case studies on (1) the system identification of an unmanned aerial vehicle and (2) a chaotic thermosyphon heat exchanger. Through these examples, we aim to demonstrate that SINDy is simple to implement yet flexible enough to serve as a valuable identification tool for advanced engineering applications.

  • 4 authors
·
Jul 15

Event-Grounded Sparse Autoencoders for Vision-Language-Action Policies

Vision-Language-Action (VLA) policies translate language and visual inputs into robot actions, where their hidden representations directly shape closed-loop behavior. However, mechanistic interpretability tools from language and vision-language models do not transfer cleanly to VLAs: outputs are robot actions rather than human-readable tokens, and interventions can only be tested via expensive closed-loop rollouts. We propose an event-grounded interpretability pipeline that anchors SAE feature analysis to behavioral events rather than text contexts. End-effector keyframes are clustered within each task using visual, state, and temporal cues, linking SAE features to behaviorally salient events and, via optional VLM annotations, to semantic context. To our knowledge, our pipeline is among the first to ground SAE-based VLA analysis in closed-loop behavioral events. Across two simulation architectures and a real-robot study, event-grounded ranking yields the strongest causal effects on OpenVLA and transfers to the continuous action chunks of π_{0.5}. SAE is a sparse but imperfect intervention basis: usability varies with architecture and intervention site, and aggressive intervention reveals safety and interpretability limits. Overall, event-grounded SAE analysis emerges as a practical starting point for behavior-anchored VLA interpretability, motivating future work on SAE features beyond action-aligned coordinates, finer-grained closed-loop evaluation, and safe interventions for high-stakes VLA deployments. Code is available at https://github.com/xc-j/Event-SAE.

  • 4 authors
·
May 16

Learning to Distill Global Representation for Sparse-View CT

Sparse-view computed tomography (CT) -- using a small number of projections for tomographic reconstruction -- enables much lower radiation dose to patients and accelerated data acquisition. The reconstructed images, however, suffer from strong artifacts, greatly limiting their diagnostic value. Current trends for sparse-view CT turn to the raw data for better information recovery. The resultant dual-domain methods, nonetheless, suffer from secondary artifacts, especially in ultra-sparse view scenarios, and their generalization to other scanners/protocols is greatly limited. A crucial question arises: have the image post-processing methods reached the limit? Our answer is not yet. In this paper, we stick to image post-processing methods due to great flexibility and propose global representation (GloRe) distillation framework for sparse-view CT, termed GloReDi. First, we propose to learn GloRe with Fourier convolution, so each element in GloRe has an image-wide receptive field. Second, unlike methods that only use the full-view images for supervision, we propose to distill GloRe from intermediate-view reconstructed images that are readily available but not explored in previous literature. The success of GloRe distillation is attributed to two key components: representation directional distillation to align the GloRe directions, and band-pass-specific contrastive distillation to gain clinically important details. Extensive experiments demonstrate the superiority of the proposed GloReDi over the state-of-the-art methods, including dual-domain ones. The source code is available at https://github.com/longzilicart/GloReDi.

  • 5 authors
·
Aug 16, 2023

Rethinking Genomic Modeling Through Optical Character Recognition

Recent genomic foundation models largely adopt large language model architectures that treat DNA as a one-dimensional token sequence. However, exhaustive sequential reading is structurally misaligned with sparse and discontinuous genomic semantics, leading to wasted computation on low-information background and preventing understanding-driven compression for long contexts. Here, we present OpticalDNA, a vision-based framework that reframes genomic modeling as Optical Character Recognition (OCR)-style document understanding. OpticalDNA renders DNA into structured visual layouts and trains an OCR-capable vision--language model with a visual DNA encoder and a document decoder, where the encoder produces compact, reconstructible visual tokens for high-fidelity compression. Building on this representation, OpticalDNA defines prompt-conditioned objectives over core genomic primitives-reading, region grounding, subsequence retrieval, and masked span completion-thereby learning layout-aware DNA representations that retain fine-grained genomic information under a reduced effective token budget. Across diverse genomic benchmarks, OpticalDNA consistently outperforms recent baselines; on sequences up to 450k bases, it achieves the best overall performance with nearly 20times fewer effective tokens, and surpasses models with up to 985times more activated parameters while tuning only 256k trainable parameters.

  • 7 authors
·
Feb 1

Circuit Claims Depend on What Is Extracted and How It Is Compared

Circuit extraction identifies a small set of model components whose presence preserves a target behavior under ablation, and the resulting circuit is often read as the mechanism behind that behavior. We argue that this reading is under-determined: preserving behavior does not single out one circuit, because the claim it supports depends on which circuit is reported and how two circuits are compared. We make this concrete in a synthetic Lean tactic-prediction benchmark -- predicting the next step of a proof -- where fixed proof rules with randomized surface form let differences between extracted circuits be attributed to these choices rather than to the task. Across dense and weight-sparse checkpoints (most weights constrained to zero) of the same transformer, evaluated on atomic (single-rule) and compositional (multi-rule) proofs, we vary which extracted object is reported (a compact prediction-preserving circuit, a broader graph that also keeps surrounding read, write, and routing structure, or the smallest subgraph meeting a post-ablation loss threshold), and whether each attention head's query and key are represented jointly or separately. Exact component-to-component edge overlap is low and sensitive to these choices, at times dropping to a random baseline, while two coarser summaries stay stable: the set of selected attention heads, and the circuit-size ranking of conditions that differ in which supervised checkpoint initializes reinforcement learning (RL). The largest accuracy gains from RL on compositional proofs come with the most structure beyond the atomic circuits. A circuit-level claim is therefore well defined only once one states which circuit is reported, the pruning threshold used to extract it, and the level at which circuits are compared. We distill these requirements into a reporting practice for circuit-extraction studies.

  • 2 authors
·
Jul 20

MatToolBench: Benchmarking Multimodal Agents in Real-World Materials Science Workflows

Multimodal GUI agents have achieved impressive results on general software benchmarks, yet their ability to operate professional scientific software remains largely unexplored. In materials science, sparse domain-specific web data, specialized interfaces, and tacit workflow conventions create blind spots that general-purpose pretraining cannot readily bridge. We present MatToolBench, the first real-environment benchmark for evaluating multimodal GUI agents on professional materials science software, comprising 204 tasks across 10 tools in three modalities: GUI operation, OriginPro scripting, and code-based database queries, all executed inside a Windows 11 VM. Each task is decomposed into fine-grained sub-criteria by domain experts, enabling interpretable partial-credit scoring; the GUI component of our multi-level evaluation pipeline achieves an average F1 of 0.98. For OriginPro figure-generation tasks, we further conduct a human-LLM agreement study to validate the use of a multimodal judge for secondary aesthetic assessment. Our experiments show that strong performance on general benchmarks does not transfer to professional scientific workflows, and that this gap is not a visual-grounding problem alone: failures arise from domain-specific operational knowledge, sparse pretraining coverage of scientific software, weak cross-tool artifact handoff, and critical states exposed only visually. Even the best model reaches only 25% success rate on GUI tasks and 45% on code tasks. MatToolBench therefore serves as a challenging diagnostic benchmark and real-environment testbed for data-scarce, knowledge-intensive scientific workflows.

  • 9 authors
·
Sep 28

History Replays Itself: Unleashing Long-Context Capability in Linear Attention

Linear attention promises the efficiency needed for long-context language modelling, yet its fixed-size recurrent state must simultaneously support ongoing computation and preserve information from an ever-growing history. This coupling has reinforced a prevailing view that the state's memory capacity defines the model's long-context capability. We challenge this presumed ceiling: recurrent computation need not bear the full burden of long-term storage. We introduce NoteBank, a sparse episodic memory that archives selected text before future queries are known, uses the backbone's native features for writing and addressing, and reads retrieved evidence through its native forward computation via replay. This training-free, plug-and-play interface requires no external embedding model, separately trained retriever, or separate neural reader. At one million tokens, it raises Gated DeltaNet's mean accuracy across six RULER retrieval tasks from 1.7% to 70.3%, with no observed significant retrieval degradation from 4K to 1M tokens. This recovery adds leqslant0.025% to analytical FLOPs, with persistent context storage approximately 1/2,600 that of a Transformer's full MHA KV cache at matched width, depth, and precision. Experiments extend from three 1.3B recurrent backbones to Mamba-2-8B and post-trained Qwen3.5-9B, demonstrating gains on LongBench v1/v2 and MemoryAgentBench. Together, these results show that sparse evidence storage and native replay can substantially expand the long-context capability of pretrained linear attention models while retaining the efficiency of recurrent computation.

Where Reliability Lives in Vision-Language Models: A Mechanistic Study of Attention, Hidden States, and Causal Circuits

A pervasive intuition holds that vision-language models (VLMs) are most trustworthy when their attention maps look sharp: concentrated attention on the queried region should imply a confident, calibrated answer. We test this Attention-Confidence Assumption directly. We instrument three open-weight VLM families (LLaVA-1.5, PaliGemma, Qwen2-VL; 3-7B parameters) with a unified mechanistic pipeline -- the VLM Reliability Probe (VRP) -- that compares attention structure, generation dynamics, and hidden-state geometry against a single correctness label. Three results emerge. (i) Attention structure is a near-zero predictor of correctness (R_pb(C_k,y)=0.001, 95% CI [-0.034,0.036]; R_pb(H_s,y)=-0.012, [-0.047,0.024] on a pooled n=3,090 split), even though attention remains causally necessary for feature extraction (top-30% patch masking drops accuracy by 8.2-11.3 pp, p<0.001). (ii) Reliability becomes legible later in the computation: a single hidden-state linear probe reaches AUROC>0.95 on POPE for two of three families, and self-consistency at K=10 is the strongest behavioral predictor we measure at 10x inference cost (R_pb=0.43). (iii) Causal neuron-level ablations expose a sharp architectural split with direct monitor-design implications: late-fusion LLaVA concentrates reliability in a fragile late bottleneck (-8.3 pp object-identification accuracy after top-5 probe-neuron ablation), whereas early-fusion PaliGemma and Qwen2-VL distribute it widely and absorb destruction of ~50% of their peak-layer hidden dimension with <=1 pp degradation. The takeaway is narrow but consequential: in 3-7B VLMs, reliability is read more reliably off hidden-state geometry, layer-wise margin formation, and sparse late-layer circuits than off attention-map sharpness.

  • 7 authors
·
May 4

Bullion: A Column Store for Machine Learning

The past two decades have witnessed significant success in applying columnar storage to data warehousing and analytics. However, the rapid growth of machine learning poses new challenges. This paper presents Bullion, a columnar storage system tailored for machine learning workloads. Bullion addresses the complexities of data compliance, optimizes the encoding of long sequence sparse features, efficiently manages wide-table projections, introduces feature quantization in storage, enables quality-aware sequential reads for multimodal training data, and provides a comprehensive cascading encoding framework that unifies diverse encoding schemes through modular, composable interfaces. By aligning with the evolving requirements of ML applications, Bullion facilitates the application of columnar storage and processing to modern application scenarios such as those within advertising, recommendation systems, and Generative AI. Preliminary experimental results and theoretical analysis demonstrate Bullion's improved ability to deliver strong performance in the face of the unique demands of machine learning workloads compared to existing columnar storage solutions. Bullion significantly reduces I/O costs for deletion compliance, achieves substantial storage savings with its optimized encoding scheme for sparse features, and improves metadata parsing speed for wide-table projections. These advancements enable Bullion to become an important component in the future of machine learning infrastructure, enabling organizations to efficiently manage and process the massive volumes of data required for training and inference in modern AI applications.

  • 4 authors
·
Apr 13, 2024

TokaMark: A Comprehensive Benchmark for MAST Tokamak Plasma Models

Development and operation of commercially viable fusion energy reactors such as tokamaks require accurate predictions of plasma dynamics from sparse, noisy, and incomplete sensors readings. The complexity of the underlying physics and the heterogeneity of experimental data pose formidable challenges for conventional numerical methods, while simultaneously highlight the promise of modern data-native AI approaches. A major obstacle in realizing this potential is, however, the lack of curated, openly available datasets and standardized benchmarks. Existing fusion datasets are scarce, fragmented across institutions, facility-specific, and inconsistently annotated, which limits reproducibility and prevents a fair and scalable comparison of AI approaches. In this paper, we introduce TokaMark, a structured benchmark to evaluate AI models on real experimental data collected from the Mega Ampere Spherical Tokamak (MAST). TokaMark provides a comprehensive suite of tools designed to (i) unify access to multi-modal heterogeneous fusion data, and (ii) harmonize formats, metadata, temporal alignment and evaluation protocols to enable consistent cross-model and cross-task comparisons. The benchmark includes a curated list of 14 tasks spanning a range of physical mechanisms, exploiting a variety of diagnostics and covering multiple operational use cases. A baseline model is provided to facilitate transparent comparison and validation within a unified framework. By establishing a unified benchmark for both the fusion and AI-for-science communities, TokaMark aims to accelerate progress in data-driven AI-based plasma modeling, contributing to the broader goal of achieving sustainable and stable fusion energy. The benchmark, documentation, and tooling will be fully open sourced upon acceptance to encourage community adoption and contribution.

  • 16 authors
·
Feb 11

Multimodal Model Diffing for Feature Discovery and Control

Multimodal Large Language Models (MLLMs) exhibit strong visual understanding, yet the internal features that cause these behaviors remain difficult to identify, audit, or control. While applicable to post-hoc inspection, hidden states that are decomposed into interpretable feature directions using sparse autoencoders (SAEs) neither readily isolate which features are changed by multimodal training, nor are they directly useful for targeted control. We introduce MMDiff, a multimodal model-diffing framework that trains multimodal SAEs and turns them into feature-level interfaces for discovering and controlling multimodal behavior. MMDiff supports three uses: (i) feature isolation, by diffing a base-LM SAE against its multimodal-adapted counterpart to identify features altered by multimodal training; (ii) task-specific feature detection, via per-token contrastive firing analysis that isolates causal features; and (iii) feature-level control, by causally removing or steering the discovered feature directions. We train multimodal SAEs for three MLLM families, LLaVA-MORE, PaliGemma 2, and InternVL3.5, and evaluate on visual-spatial understanding, multimodal safety, and OCR. MMDiff discovers sparse, causally specific features whose removal selectively degrades target behaviors by an average of 12% on spatial tasks and 17% on OCR, and reduces attack success rate by 24% on multimodal safety attacks, with no impact on VQA performance. Steering these features improves spatial and OCR accuracy by +3.6% and +1.8% on average over a standard single-layer steering baseline. These results show that multimodal SAEs can serve not only as interpretability tools, but as mechanisms for auditing, steering, and controlling MLLMs behavior toward safer and more capable generations.

Adversarial Déjà Vu: Jailbreak Dictionary Learning for Stronger Generalization to Unseen Attacks

Large language models remain vulnerable to jailbreak attacks that bypass safety guardrails to elicit harmful outputs. Defending against novel jailbreaks represents a critical challenge in AI safety. Adversarial training -- designed to make models robust against worst-case perturbations -- has been the dominant paradigm for adversarial robustness. However, due to optimization challenges and difficulties in defining realistic threat models, adversarial training methods often fail on newly developed jailbreaks in practice. This paper proposes a new paradigm for improving robustness against unseen jailbreaks, centered on the Adversarial Déjà Vu hypothesis: novel jailbreaks are not fundamentally new, but largely recombinations of adversarial skills from previous attacks. We study this hypothesis through a large-scale analysis of 32 attack papers published over two years. Using an automated pipeline, we extract and compress adversarial skills into a sparse dictionary of primitives, with LLMs generating human-readable descriptions. Our analysis reveals that unseen attacks can be effectively explained as sparse compositions of earlier skills, with explanatory power increasing monotonically as skill coverage grows. Guided by this insight, we introduce Adversarial Skill Compositional Training (ASCoT), which trains on diverse compositions of skill primitives rather than isolated attack instances. ASCoT substantially improves robustness to unseen attacks, including multi-turn jailbreaks, while maintaining low over-refusal rates. We also demonstrate that expanding adversarial skill coverage, not just data scale, is key to defending against novel attacks. red{\textbf{Warning: This paper contains content that may be harmful or offensive in nature.

  • 11 authors
·
Mar 1

FastOCR: Dynamic Visual Fixation via KV Cache Pruning for Efficient Document Parsing

Vision-Language Models (VLMs) have shown strong promise on Optical Character Recognition (OCR), yet the sheer number of visual tokens required to encode dense documents incurs prohibitive inference cost. Existing pruning methods rely on physical eviction, e.g., permanently discarding visual tokens during the prefill stage. While effective for natural images, this strategy fundamentally breaks down on OCR, where virtually every visual token may correspond to a character or structural element, and any irreversible loss leads to catastrophic accuracy degradation. We observe that, although document images appear globally dense and seemingly unprunable, the model's attention to them is in fact temporally sparse: at each decoding step it concentrates on a small region that shifts gradually across steps, much as a human reader fixates on successive words rather than perceiving an entire page at once. Motivated by this Dynamic Visual Fixation phenomenon, we recast the intractable global pruning problem as a tractable local, dynamic one and propose FastOCR, a training-free framework with two complementary modules. Specifically, Focal-Guided Pruning identifies a small set of focal layers and selects the most task-relevant visual tokens from them at each step, while Cross-Step Fixation Reuse exploits the gradual shift of fixation to warm-start each step from the previous one. By dynamically adjusting which tokens are attended rather than evicting any from the cache, FastOCR avoids permanent information loss. Extensive experiments show that FastOCR serves as a plug-and-play acceleration module, generalizing consistently across five VLMs of varying sizes and architectures. On Qwen2.5-VL, FastOCR retains 98% of the unpruned model's accuracy while attending to only 5% of the visual tokens per decoding step, reducing attention latency by 3.0times.

  • 10 authors
·
May 16

Scalable Learning in Structured Recurrent Spiking Neural Networks without Backpropagation

Spiking Neural Networks (SNNs) provide a promising framework for energy-efficient and biologically grounded computation; however, scalable learning in deep recurrent architectures with sparse connectivity remains a major challenge. In this work, we propose a structured multi-layer recurrent SNN architecture composed of locally dense recurrent layers augmented with sparse small-world long-range projections to a readout population. The long-range connectivity is largely fixed, preserving routing efficiency and hardware scalability, while synaptic adaptation is performed using strictly local plasticity mechanisms. To enable supervised learning without backpropagation or surrogate gradients, we introduce a biologically motivated learning framework that combines: (i) population-based winner-take-all (WTA) teaching signals at the output layer, (ii) fixed random broadcast alignment feedback pathways, and (iii) low-dimensional modulatory neuron populations that gate synaptic updates through three-factor learning rules with eligibility traces. This design supports deep recurrent computation with sparse global communication and purely local synaptic updates. We analyze the algorithmic properties, computational complexity, and hardware feasibility of the proposed approach, and demonstrate stable learning and competitive performance on benchmark classification tasks. The results highlight the potential of structured recurrence and neuromodulatory learning to enable scalable, hardware-compatible SNN training beyond gradient-based methods.

  • 2 authors
·
Apr 30

Artificial Intelligence Virtual Cells: From Measurements to Decisions across Modality, Scale, Dynamics, and Evaluation

Artificial Intelligence Virtual Cells (AIVCs) aim to learn executable, decision-relevant models of cell state from multimodal, multiscale measurements. Recent studies have introduced single-cell and spatial foundation models, improved cross-modality alignment, scaled perturbation atlases, and explored pathway-level readouts. Nevertheless, although held-out validation is standard practice, evaluations remain predominantly within single datasets and settings; evidence indicates that transport across laboratories and platforms is often limited, that some data splits are vulnerable to leakage and coverage bias, and that dose, time and combination effects are not yet systematically handled. Cross-scale coupling also remains constrained, as anchors linking molecular, cellular and tissue levels are sparse, and alignment to scientific or clinical readouts varies across studies. We propose a model-agnostic Cell-State Latent (CSL) perspective that organizes learning via an operator grammar: measurement, lift/project for cross-scale coupling, and intervention for dosing and scheduling. This view motivates a decision-aligned evaluation blueprint across modality, scale, context and intervention, and emphasizes function-space readouts such as pathway activity, spatial neighborhoods and clinically relevant endpoints. We recommend operator-aware data design, leakage-resistant partitions, and transparent calibration and reporting to enable reproducible, like-for-like comparisons.

  • 2 authors
·
Dec 1, 2025

Offline Reinforcement Learning for LLM Multi-Step Reasoning

Improving the multi-step reasoning ability of large language models (LLMs) with offline reinforcement learning (RL) is essential for quickly adapting them to complex tasks. While Direct Preference Optimization (DPO) has shown promise in aligning LLMs with human preferences, it is less suitable for multi-step reasoning tasks because (1) DPO relies on paired preference data, which is not readily available for multi-step reasoning tasks, and (2) it treats all tokens uniformly, making it ineffective for credit assignment in multi-step reasoning tasks, which often come with sparse reward. In this work, we propose OREO (Offline Reasoning Optimization), an offline RL method for enhancing LLM multi-step reasoning. Building on insights from previous works of maximum entropy reinforcement learning, it jointly learns a policy model and value function by optimizing the soft Bellman Equation. We show in principle that it reduces the need to collect pairwise data and enables better credit assignment. Empirically, OREO surpasses existing offline learning methods on multi-step reasoning benchmarks, including mathematical reasoning tasks (GSM8K, MATH) and embodied agent control (ALFWorld). The approach can be extended to a multi-iteration framework when additional resources are available. Furthermore, the learned value function can be leveraged to guide the tree search for free, which can further boost performance during test time.

  • 7 authors
·
Dec 20, 2024 6

Towards Competitive Search Relevance For Inference-Free Learned Sparse Retrievers

Learned sparse retrieval, which can efficiently perform retrieval through mature inverted-index engines, has garnered growing attention in recent years. Particularly, the inference-free sparse retrievers are attractive as they eliminate online model inference in the retrieval phase thereby avoids huge computational cost, offering reasonable throughput and latency. However, even the state-of-the-art (SOTA) inference-free sparse models lag far behind in terms of search relevance when compared to both sparse and dense siamese models. Towards competitive search relevance for inference-free sparse retrievers, we argue that they deserve dedicated training methods other than using same ones with siamese encoders. In this paper, we propose two different approaches for performance improvement. First, we introduce the IDF-aware FLOPS loss, which introduces Inverted Document Frequency (IDF) to the sparsification of representations. We find that it mitigates the negative impact of the FLOPS regularization on search relevance, allowing the model to achieve a better balance between accuracy and efficiency. Moreover, we propose a heterogeneous ensemble knowledge distillation framework that combines siamese dense and sparse retrievers to generate supervisory signals during the pre-training phase. The ensemble framework of dense and sparse retriever capitalizes on their strengths respectively, providing a strong upper bound for knowledge distillation. To concur the diverse feedback from heterogeneous supervisors, we normalize and then aggregate the outputs of the teacher models to eliminate score scale differences. On the BEIR benchmark, our model outperforms existing SOTA inference-free sparse model by 3.3 NDCG@10 score. It exhibits search relevance comparable to siamese sparse retrievers and client-side latency only 1.1x that of BM25.

  • 3 authors
·
Nov 6, 2024

A Unified Framework for Learned Sparse Retrieval

Learned sparse retrieval (LSR) is a family of first-stage retrieval methods that are trained to generate sparse lexical representations of queries and documents for use with an inverted index. Many LSR methods have been recently introduced, with Splade models achieving state-of-the-art performance on MSMarco. Despite similarities in their model architectures, many LSR methods show substantial differences in effectiveness and efficiency. Differences in the experimental setups and configurations used make it difficult to compare the methods and derive insights. In this work, we analyze existing LSR methods and identify key components to establish an LSR framework that unifies all LSR methods under the same perspective. We then reproduce all prominent methods using a common codebase and re-train them in the same environment, which allows us to quantify how components of the framework affect effectiveness and efficiency. We find that (1) including document term weighting is most important for a method's effectiveness, (2) including query weighting has a small positive impact, and (3) document expansion and query expansion have a cancellation effect. As a result, we show how removing query expansion from a state-of-the-art model can reduce latency significantly while maintaining effectiveness on MSMarco and TripClick benchmarks. Our code is publicly available at https://github.com/thongnt99/learned-sparse-retrieval

  • 3 authors
·
Mar 23, 2023

Sparse Iso-FLOP Transformations for Maximizing Training Efficiency

Recent works have explored the use of weight sparsity to improve the training efficiency (test accuracy w.r.t training FLOPs) of deep neural networks (DNNs). These works aim to reduce training FLOPs but training with sparse weights often leads to accuracy loss or requires longer training schedules, making the resulting training efficiency less clear. In contrast, we focus on using sparsity to increase accuracy while using the same FLOPs as the dense model and show training efficiency gains through higher accuracy. In this work, we introduce Sparse-IFT, a family of Sparse Iso-FLOP Transformations which are used as drop-in replacements for dense layers to improve their representational capacity and FLOP efficiency. Each transformation is parameterized by a single hyperparameter (sparsity level) and provides a larger search space to find optimal sparse masks. Without changing any training hyperparameters, replacing dense layers with Sparse-IFT leads to significant improvements across computer vision (CV) and natural language processing (NLP) tasks, including ResNet-18 on ImageNet (+3.5%) and GPT-3 Small on WikiText-103 (-0.4 PPL), both matching larger dense model variants that use 2x or more FLOPs. To our knowledge, this is the first work to demonstrate the use of sparsity for improving the accuracy of dense models via a simple-to-use set of sparse transformations. Code is available at: https://github.com/CerebrasResearch/Sparse-IFT.

  • 4 authors
·
Mar 20, 2023

The Sparse Frontier: Sparse Attention Trade-offs in Transformer LLMs

Sparse attention offers a promising strategy to extend long-context capabilities in Transformer LLMs, yet its viability, its efficiency-accuracy trade-offs, and systematic scaling studies remain unexplored. To address this gap, we perform a careful comparison of training-free sparse attention methods at varying model scales, sequence lengths, and sparsity levels on a diverse collection of long-sequence tasks-including novel ones that rely on natural language while remaining controllable and easy to evaluate. Based on our experiments, we report a series of key findings: 1) an isoFLOPS analysis reveals that for very long sequences, larger and highly sparse models are preferable to smaller and dense ones. 2) The level of sparsity attainable while statistically guaranteeing accuracy preservation is higher during decoding than prefilling, and correlates with model size in the former. 3) There is no clear strategy that performs best across tasks and phases, with different units of sparsification or budget adaptivity needed for different scenarios. Even moderate sparsity levels often result in significant performance degradation on at least one task, highlighting that sparse attention is not a universal solution. 4) We introduce and validate novel scaling laws specifically tailored for sparse attention, providing evidence that our findings are likely to hold true beyond our range of experiments. Through these insights, we demonstrate that sparse attention is a key tool to enhance the capabilities of Transformer LLMs for processing longer sequences, but requires careful evaluation of trade-offs for performance-sensitive applications.

  • 6 authors
·
Apr 24, 2025 3

Mistral-SPLADE: LLMs for better Learned Sparse Retrieval

Learned Sparse Retrievers (LSR) have evolved into an effective retrieval strategy that can bridge the gap between traditional keyword-based sparse retrievers and embedding-based dense retrievers. At its core, learned sparse retrievers try to learn the most important semantic keyword expansions from a query and/or document which can facilitate better retrieval with overlapping keyword expansions. LSR like SPLADE has typically been using encoder only models with MLM (masked language modeling) style objective in conjunction with known ways of retrieval performance improvement such as hard negative mining, distillation, etc. In this work, we propose to use decoder-only model for learning semantic keyword expansion. We posit, decoder only models that have seen much higher magnitudes of data are better equipped to learn keyword expansions needed for improved retrieval. We use Mistral as the backbone to develop our Learned Sparse Retriever similar to SPLADE and train it on a subset of sentence-transformer data which is often used for training text embedding models. Our experiments support the hypothesis that a sparse retrieval model based on decoder only large language model (LLM) surpasses the performance of existing LSR systems, including SPLADE and all its variants. The LLM based model (Echo-Mistral-SPLADE) now stands as a state-of-the-art learned sparse retrieval model on the BEIR text retrieval benchmark.

  • 5 authors
·
Aug 20, 2024

Ten Lessons We Have Learned in the New "Sparseland": A Short Handbook for Sparse Neural Network Researchers

This article does not propose any novel algorithm or new hardware for sparsity. Instead, it aims to serve the "common good" for the increasingly prosperous Sparse Neural Network (SNN) research community. We attempt to summarize some most common confusions in SNNs, that one may come across in various scenarios such as paper review/rebuttal and talks - many drawn from the authors' own bittersweet experiences! We feel that doing so is meaningful and timely, since the focus of SNN research is notably shifting from traditional pruning to more diverse and profound forms of sparsity before, during, and after training. The intricate relationships between their scopes, assumptions, and approaches lead to misunderstandings, for non-experts or even experts in SNNs. In response, we summarize ten Q\&As of SNNs from many key aspects, including dense vs. sparse, unstructured sparse vs. structured sparse, pruning vs. sparse training, dense-to-sparse training vs. sparse-to-sparse training, static sparsity vs. dynamic sparsity, before-training/during-training vs. post-training sparsity, and many more. We strive to provide proper and generically applicable answers to clarify those confusions to the best extent possible. We hope our summary provides useful general knowledge for people who want to enter and engage with this exciting community; and also provides some "mind of ease" convenience for SNN researchers to explain their work in the right contexts. At the very least (and perhaps as this article's most insignificant target functionality), if you are writing/planning to write a paper or rebuttal in the field of SNNs, we hope some of our answers could help you!

  • 2 authors
·
Feb 6, 2023

SparDA: Sparse Decoupled Attention for Efficient Long-Context LLM Inference

Sparse attention reduces compute and memory bandwidth for long-context LLM inference. However, two key challenges remain: (1) KV cache capacity still grows with sequence length, and offloading to CPU memory introduces a PCIe transfer bottleneck; (2) the sparse selection step itself retains O(T^2) complexity and can dominate attention cost at long contexts. We propose SparDA, a decoupled sparse attention architecture that introduces a fourth per-layer projection, the Forecast, alongside Query, Key, and Value. The Forecast predicts the KV blocks needed by the next layer, enabling lookahead selection that overlaps CPU-to-GPU prefetch with current-layer execution. Because Forecast is decoupled from the attention query, our GQA implementation uses one Forecast head per GQA group, reducing selection overhead versus the original multi-head selector. SparDA adds <0.5% parameters and trains only the Forecast projections by matching the original selector's attention distribution. On two sparse-pretrained 8B models, SparDA matches or slightly improves accuracy and delivers up to 1.25times prefill speedup and 1.7times decode speedup over the sparse-attention offload baseline. By enabling larger feasible batch sizes on a single GPU, SparDA further reaches up to 5.3times higher decode throughput than the non-offload sparse baseline. Our source code is available at https://github.com/NVlabs/SparDA.

nvidia NVIDIA
·
Jun 2 2

SpenseGPT: Practical One-shot Pruning Enabling Sparse and Dense GEMMs for LLM Inference

Semi-structured 2:4 sparsity is widely supported by modern accelerators, providing up to a 2x theoretical speedup. However, its strict 50% sparsity constraint often causes non-negligible accuracy degradation under post-training pruning. Meanwhile, existing relaxed sparsity formats either require specialized compiler support or introduce runtime overheads that limit end-to-end speedup. We propose Spense, a practical hybrid sparse-dense format that splits each weight matrix into a 2:4 sparse region and a dense region. This design relaxes the effective sparsity constraint while remaining compatible with existing high-performance sparse and dense GEMM libraries, avoiding both custom compiler support and input activation expansion. Building on this format, we introduce SpenseGPT, a one-shot post-training pruning method that produces sparse and dense regions. Notably, we show that selecting the right dense regions is important, and we devise two different strategies to choose them. Experiments on Qwen3-32B and Seed-OSS-36B demonstrate that our method achieves up to 1.2x end-to-end decoding speedup on B200 GPUs with FP8 precision, while preserving accuracy. To the best of our knowledge, this is the first one-shot pruning demonstration of real-world end-to-end LLM decoding speedup from semi-structured sparse tensor cores on recent GPUs such as B200s, while maintaining model quality.

  • 3 authors
·
Jun 8

Efficient Inverted Indexes for Approximate Retrieval over Learned Sparse Representations

Learned sparse representations form an attractive class of contextual embeddings for text retrieval. That is so because they are effective models of relevance and are interpretable by design. Despite their apparent compatibility with inverted indexes, however, retrieval over sparse embeddings remains challenging. That is due to the distributional differences between learned embeddings and term frequency-based lexical models of relevance such as BM25. Recognizing this challenge, a great deal of research has gone into, among other things, designing retrieval algorithms tailored to the properties of learned sparse representations, including approximate retrieval systems. In fact, this task featured prominently in the latest BigANN Challenge at NeurIPS 2023, where approximate algorithms were evaluated on a large benchmark dataset by throughput and recall. In this work, we propose a novel organization of the inverted index that enables fast yet effective approximate retrieval over learned sparse embeddings. Our approach organizes inverted lists into geometrically-cohesive blocks, each equipped with a summary vector. During query processing, we quickly determine if a block must be evaluated using the summaries. As we show experimentally, single-threaded query processing using our method, Seismic, reaches sub-millisecond per-query latency on various sparse embeddings of the MS MARCO dataset while maintaining high recall. Our results indicate that Seismic is one to two orders of magnitude faster than state-of-the-art inverted index-based solutions and further outperforms the winning (graph-based) submissions to the BigANN Challenge by a significant margin.

  • 4 authors
·
Apr 29, 2024

LLMs as Sparse Retrievers:A Framework for First-Stage Product Search

Product search is a crucial component of modern e-commerce platforms, with billions of user queries every day. In product search systems, first-stage retrieval should achieve high recall while ensuring efficient online deployment. Sparse retrieval is particularly attractive in this context due to its interpretability and storage efficiency. However, sparse retrieval methods suffer from severe vocabulary mismatch issues, leading to suboptimal performance in product search scenarios. With their potential for semantic analysis, large language models (LLMs) offer a promising avenue for mitigating vocabulary mismatch issues and thereby improving retrieval quality. Directly applying LLMs to sparse retrieval in product search exposes two key challenges:(1)Queries and product titles are typically short and highly susceptible to LLM-induced hallucinations, such as generating irrelevant expansion terms or underweighting critical literal terms like brand names and model numbers;(2)The large vocabulary space of LLMs leads to difficulty in initializing training effectively, making it challenging to learn meaningful sparse representations in such ultra-high-dimensional spaces.To address these challenges, we propose PROSPER, a framework for PROduct search leveraging LLMs as SParsE Retrievers. PROSPER incorporates: (1)A literal residual network that alleviates hallucination in lexical expansion by reinforcing underweighted literal terms through a residual compensation mechanism; and (2)A lexical focusing window that facilitates effective training initialization via a coarse-to-fine sparsification strategy.Extensive offline and online experiments show that PROSPER significantly outperforms sparse baselines and achieves recall performance comparable to advanced dense retrievers, while also achieving revenue increments online.

  • 9 authors
·
Oct 21, 2025

Dynamic Sparse No Training: Training-Free Fine-tuning for Sparse LLMs

The ever-increasing large language models (LLMs), though opening a potential path for the upcoming artificial general intelligence, sadly drops a daunting obstacle on the way towards their on-device deployment. As one of the most well-established pre-LLMs approaches in reducing model complexity, network pruning appears to lag behind in the era of LLMs, due mostly to its costly fine-tuning (or re-training) necessity under the massive volumes of model parameter and training data. To close this industry-academia gap, we introduce Dynamic Sparse No Training (DSnoT), a training-free fine-tuning approach that slightly updates sparse LLMs without the expensive backpropagation and any weight updates. Inspired by the Dynamic Sparse Training, DSnoT minimizes the reconstruction error between the dense and sparse LLMs, in the fashion of performing iterative weight pruning-and-growing on top of sparse LLMs. To accomplish this purpose, DSnoT particularly takes into account the anticipated reduction in reconstruction error for pruning and growing, as well as the variance w.r.t. different input data for growing each weight. This practice can be executed efficiently in linear time since its obviates the need of backpropagation for fine-tuning LLMs. Extensive experiments on LLaMA-V1/V2, Vicuna, and OPT across various benchmarks demonstrate the effectiveness of DSnoT in enhancing the performance of sparse LLMs, especially at high sparsity levels. For instance, DSnoT is able to outperform the state-of-the-art Wanda by 26.79 perplexity at 70% sparsity with LLaMA-7B. Our paper offers fresh insights into how to fine-tune sparse LLMs in an efficient training-free manner and open new venues to scale the great potential of sparsity to LLMs. Codes are available at https://github.com/zyxxmu/DSnoT.

  • 9 authors
·
Oct 13, 2023

Progressive Gradient Flow for Robust N:M Sparsity Training in Transformers

N:M Structured sparsity has garnered significant interest as a result of relatively modest overhead and improved efficiency. Additionally, this form of sparsity holds considerable appeal for reducing the memory footprint owing to their modest representation overhead. There have been efforts to develop training recipes for N:M structured sparsity, they primarily focus on low-sparsity regions (sim50\%). Nonetheless, performance of models trained using these approaches tends to decline when confronted with high-sparsity regions (>80\%). In this work, we study the effectiveness of existing sparse training recipes at high-sparsity regions and argue that these methods fail to sustain the model quality on par with low-sparsity regions. We demonstrate that the significant factor contributing to this disparity is the presence of elevated levels of induced noise in the gradient magnitudes. To mitigate this undesirable effect, we employ decay mechanisms to progressively restrict the flow of gradients towards pruned elements. Our approach improves the model quality by up to 2% and 5% in vision and language models at high sparsity regime, respectively. We also evaluate the trade-off between model accuracy and training compute cost in terms of FLOPs. At iso-training FLOPs, our method yields better performance compared to conventional sparse training recipes, exhibiting an accuracy improvement of up to 2%. The source code is available at https://github.com/abhibambhaniya/progressive_gradient_flow_nm_sparsity.

  • 7 authors
·
Feb 7, 2024 1

Sparse and Dense Retrievers Learn Better Together: Joint Sparse-Dense Optimization for Text-Image Retrieval

Vision-Language Pretrained (VLP) models have achieved impressive performance on multimodal tasks, including text-image retrieval, based on dense representations. Meanwhile, Learned Sparse Retrieval (LSR) has gained traction in text-only settings due to its interpretability and efficiency with fast term-based lookup via inverted indexes. Inspired by these advantages, recent work has extended LSR to the multimodal domain. However, these methods often rely on computationally expensive contrastive pre-training, or distillation from a frozen dense model, which limits the potential for mutual enhancement. To address these limitations, we propose a simple yet effective framework that enables bi-directional learning between dense and sparse representations through Self-Knowledge Distillation. This bi-directional learning is achieved using an integrated similarity score-a weighted sum of dense and sparse similarities-which serves as a shared teacher signal for both representations. To ensure efficiency, we fine-tune the final layer of the dense encoder and the sparse projection head, enabling easy adaptation of any existing VLP model. Experiments on MSCOCO and Flickr30k demonstrate that our sparse retriever not only outperforms existing sparse baselines, but also achieves performance comparable to-or even surpassing-its dense counterparts, while retaining the benefits of sparse models.

  • 6 authors
·
Aug 21, 2025

Periscope: Extending Frozen Language Models Beyond Their Context Window

A language model reads long text in one quadratic forward pass, stops at the context window, and loses accuracy with length before reaching it. We ask whether the read can be factorized when deciding over a finite set: which document is relevant, which option is supported, which passage is the evidence. Periscope, a training-free inference method, arranges the N chunks of a text on a K{times}K grid with K{=}lceilNrceil and asks a frozen model the same question about K local spans of consecutive chunks and K strided spans that sample the whole text, reading the log-odds of every answer at one token. Each answer takes its best local and strided score, and scoring every chunk by its two spans gives an evidence map at no further cost, whose peak is the chunk behind the answer. Every probe is about sc tokens for a text of s tokens and chunk size c, so a window of W tokens reaches W^{2}/c tokens at s^{1.5} cost. The map replaces the long read. On LongBench v2, reading only the K chunks the map ranks highest, 9k tokens, matches the same model's best window read across windows from 32k to 1M tokens, and on InfiniteBench, where the median context is 150k tokens, it leads the best window read by 5 points. The same map ranks BRIGHT's long-document corpora with the best NDCG@10 of six methods. Each call caches only one probe, so a 27B model reads 4.5M-token contexts on one 80GB GPU, where a single pass would need 296GB of cache. A long read then needs a GPU that holds the model, not one that holds the text.

Sparse Linear Regression is Easy on Random Supports

Sparse linear regression is one of the most basic questions in machine learning and statistics. Here, we are given as input a design matrix X in R^{N times d} and measurements or labels {y} in R^N where {y} = {X} {w}^* + {xi}, and {xi} is the noise in the measurements. Importantly, we have the additional constraint that the unknown signal vector {w}^* is sparse: it has k non-zero entries where k is much smaller than the ambient dimension. Our goal is to output a prediction vector {w} that has small prediction error: 1{N}cdot |{X} {w}^* - {X} {w}|^2_2. Information-theoretically, we know what is best possible in terms of measurements: under most natural noise distributions, we can get prediction error at most epsilon with roughly N = O(k log d/epsilon) samples. Computationally, this currently needs d^{Omega(k)} run-time. Alternately, with N = O(d), we can get polynomial-time. Thus, there is an exponential gap (in the dependence on d) between the two and we do not know if it is possible to get d^{o(k)} run-time and o(d) samples. We give the first generic positive result for worst-case design matrices {X}: For any {X}, we show that if the support of {w}^* is chosen at random, we can get prediction error epsilon with N = poly(k, log d, 1/epsilon) samples and run-time poly(d,N). This run-time holds for any design matrix {X} with condition number up to 2^{poly(d)}. Previously, such results were known for worst-case {w}^*, but only for random design matrices from well-behaved families, matrices that have a very low condition number (poly(log d); e.g., as studied in compressed sensing), or those with special structural properties.

  • 3 authors
·
Nov 8, 2025