Commit History

feat(docs): update implementation roadmap and add specs for Phases 9-11
3fcd8e7

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Merge pull request #13 from The-Obstacle-Is-The-Way/dev
388cd05

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fix(report): add explicit JSON structure guidance in prompt
d01e70d

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refactor(examples): apply CodeRabbit feedback (validations, complexity, formatting)
cd11dad

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refactor(examples): purge all mocks - real API calls only
cfb473d

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feat(examples): add Phase 6-8 demos for full stack demonstration
0efdc2f

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fix: address all CodeRabbit Phase 8 review feedback
f1e4e5b

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fix: apply lazy init pattern and pydantic-ai fixes to ReportAgent (#12)
3139749

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Merge pull request #11 from The-Obstacle-Is-The-Way/feat/phase7-hypothesis-agent
e993253

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fix: mock get_model in tests to avoid API key requirement in CI
ebc6429

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fix: address CodeRabbit Phase 7 review feedback
bc74531

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feat(phase7): implement Hypothesis Agent for mechanistic reasoning
c690006

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Merge pull request #10 from The-Obstacle-Is-The-Way/feat/phase6-embeddings
b25ffdb

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fix: address CodeRabbit Phase 6 review feedback
506a9c0

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fix: address CodeRabbit Phase 5 review feedback
d247864

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feat(phase6): Embeddings & Semantic Search implementation
3bacbf8

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docs: comprehensive Phase 6-8 spec revisions (Senior Architect audit)
ec3d7dc

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feat(architecture): update system design and roadmap for Phases 1-8
2dc022a

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feat(phase8): implement Report Agent for structured scientific report generation
2763672

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feat(phase6): implement embeddings for semantic search and deduplication
53bf395

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fix(ci): add E402/RUF100 to ignore for cross-env compatibility
ecbc47b

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fix(ci): skip agent tests when agent-framework not installed
5a82171

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chore: vendor agent-framework for deployment (fix pre-commit)
7057335

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fix: pass API keys explicitly to pydantic-ai providers
1f96735

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fix: pydantic-ai v1 compatibility and Anthropic model update
4732667

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Merge pull request #7 from The-Obstacle-Is-The-Way/feat/phase4
35ebd09

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fix: add type ignore comment for Agent instantiation in JudgeHandler
9760706

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fix(tests): resolve mypy divergence and test failures
95d2e29

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feat(phase3): implement judge slice (LLM Judge, Prompts, Models)
d7e5abb

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fix(phase2): address CodeRabbit review feedback + add examples
32e3b61

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feat(phase2): add sample_evidence fixture to conftest.py
2457ae0

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fix: resolve mypy divergence between make check and pre-commit
cace02f

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feat(phase2): implement search slice (PubMed, Web, Orchestrator) (#4)
499170b

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feat(phase1): add Makefile for developer experience
32fcf60

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fix: add bash language identifier to code block (CodeRabbit)
481bdd7

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docs: update Phase 1 documentation with new directory structure and configuration details
d33aedd

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docs: finalize Phase 4 implementation with Orchestrator and Gradio UI
33b0f43

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docs: update implementation documentation for Phases 1-4
77627ff

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docs: enhance Phase 4 UI and Orchestrator documentation
5c8b030

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docs: enhance Phase 4 documentation with detailed implementation and deployment instructions
d0b14c0

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