Spaces:
Sleeping
Sleeping
feat: add AURIS classifier training module with model evaluation and feature importance
Browse files- app/training/train_classifier.py +237 -0
app/training/train_classifier.py
ADDED
|
@@ -0,0 +1,237 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Train AURIS classifier on extracted audio features.
|
| 3 |
+
|
| 4 |
+
Increment 1: RandomForest / GradientBoosting on librosa + vocal features.
|
| 5 |
+
This replaces the heuristic scoring with a data-driven classifier.
|
| 6 |
+
|
| 7 |
+
Usage:
|
| 8 |
+
python -m app.training.train_classifier data/sonics/features.csv
|
| 9 |
+
|
| 10 |
+
Outputs:
|
| 11 |
+
models/auris_classifier_v1.pkl — trained model
|
| 12 |
+
models/feature_scaler_v1.pkl — fitted StandardScaler
|
| 13 |
+
models/feature_columns_v1.json — ordered feature column names
|
| 14 |
+
"""
|
| 15 |
+
|
| 16 |
+
from __future__ import annotations
|
| 17 |
+
|
| 18 |
+
import csv
|
| 19 |
+
import json
|
| 20 |
+
import pickle
|
| 21 |
+
import sys
|
| 22 |
+
from pathlib import Path
|
| 23 |
+
|
| 24 |
+
import numpy as np
|
| 25 |
+
|
| 26 |
+
from sklearn.ensemble import (
|
| 27 |
+
GradientBoostingClassifier,
|
| 28 |
+
RandomForestClassifier,
|
| 29 |
+
)
|
| 30 |
+
from sklearn.model_selection import (
|
| 31 |
+
StratifiedKFold,
|
| 32 |
+
cross_val_predict,
|
| 33 |
+
)
|
| 34 |
+
from sklearn.preprocessing import StandardScaler
|
| 35 |
+
from sklearn.metrics import (
|
| 36 |
+
accuracy_score,
|
| 37 |
+
f1_score,
|
| 38 |
+
roc_auc_score,
|
| 39 |
+
)
|
| 40 |
+
|
| 41 |
+
# Optional: LightGBM for better performance
|
| 42 |
+
try:
|
| 43 |
+
import lightgbm as lgb
|
| 44 |
+
HAS_LGBM = True
|
| 45 |
+
except ImportError:
|
| 46 |
+
HAS_LGBM = False
|
| 47 |
+
|
| 48 |
+
sys.path.insert(0, str(Path(__file__).resolve().parents[2]))
|
| 49 |
+
from app.training.evaluate import (
|
| 50 |
+
load_features_csv,
|
| 51 |
+
evaluate_predictions,
|
| 52 |
+
)
|
| 53 |
+
|
| 54 |
+
|
| 55 |
+
def train(
|
| 56 |
+
features_csv: str | Path,
|
| 57 |
+
models_dir: str | Path = "models",
|
| 58 |
+
n_folds: int = 5,
|
| 59 |
+
) -> dict:
|
| 60 |
+
"""
|
| 61 |
+
Train and evaluate classifier on extracted features.
|
| 62 |
+
|
| 63 |
+
Uses 5-fold cross-validation to estimate real accuracy,
|
| 64 |
+
then trains final model on all data.
|
| 65 |
+
|
| 66 |
+
Returns:
|
| 67 |
+
Dict with metrics and model paths.
|
| 68 |
+
"""
|
| 69 |
+
models_dir = Path(models_dir)
|
| 70 |
+
models_dir.mkdir(parents=True, exist_ok=True)
|
| 71 |
+
|
| 72 |
+
# ── Load data ──────────────────────────────────
|
| 73 |
+
X, y = load_features_csv(features_csv)
|
| 74 |
+
|
| 75 |
+
# Get feature column names
|
| 76 |
+
with open(features_csv, "r", encoding="utf-8") as f:
|
| 77 |
+
reader = csv.DictReader(f)
|
| 78 |
+
feature_cols = [
|
| 79 |
+
c for c in reader.fieldnames
|
| 80 |
+
if c not in ("file_path", "label_int")
|
| 81 |
+
]
|
| 82 |
+
|
| 83 |
+
# ── Handle NaN/Inf ─────────────────────────────
|
| 84 |
+
X = np.nan_to_num(X, nan=0.0, posinf=1.0, neginf=-1.0)
|
| 85 |
+
|
| 86 |
+
# ── Scale features ─────────────────────────────
|
| 87 |
+
scaler = StandardScaler()
|
| 88 |
+
X_scaled = scaler.fit_transform(X)
|
| 89 |
+
|
| 90 |
+
# ── Train multiple models, pick best ───────────
|
| 91 |
+
candidates = _build_candidates()
|
| 92 |
+
best_model = None
|
| 93 |
+
best_name = ""
|
| 94 |
+
best_auc = 0.0
|
| 95 |
+
results = {}
|
| 96 |
+
|
| 97 |
+
cv = StratifiedKFold(n_splits=n_folds, shuffle=True, random_state=42)
|
| 98 |
+
|
| 99 |
+
for name, model in candidates:
|
| 100 |
+
print(f"\n{'─' * 40}")
|
| 101 |
+
print(f"Training: {name}")
|
| 102 |
+
print(f"{'─' * 40}")
|
| 103 |
+
|
| 104 |
+
# Cross-validated predictions
|
| 105 |
+
y_prob = cross_val_predict(
|
| 106 |
+
model, X_scaled, y,
|
| 107 |
+
cv=cv, method="predict_proba",
|
| 108 |
+
)[:, 1]
|
| 109 |
+
y_pred = (y_prob > 0.5).astype(int)
|
| 110 |
+
|
| 111 |
+
acc = accuracy_score(y, y_pred)
|
| 112 |
+
f1 = f1_score(y, y_pred)
|
| 113 |
+
auc = roc_auc_score(y, y_prob)
|
| 114 |
+
|
| 115 |
+
print(f" CV Accuracy: {acc:.4f}")
|
| 116 |
+
print(f" CV F1: {f1:.4f}")
|
| 117 |
+
print(f" CV ROC-AUC: {auc:.4f}")
|
| 118 |
+
|
| 119 |
+
results[name] = {
|
| 120 |
+
"accuracy": round(acc, 4),
|
| 121 |
+
"f1": round(f1, 4),
|
| 122 |
+
"roc_auc": round(auc, 4),
|
| 123 |
+
}
|
| 124 |
+
|
| 125 |
+
if auc > best_auc:
|
| 126 |
+
best_auc = auc
|
| 127 |
+
best_name = name
|
| 128 |
+
best_model = model
|
| 129 |
+
|
| 130 |
+
# ── Final evaluation of best model ─────────────
|
| 131 |
+
print(f"\n{'=' * 50}")
|
| 132 |
+
print(f" Best model: {best_name} (AUC={best_auc:.4f})")
|
| 133 |
+
print(f"{'=' * 50}")
|
| 134 |
+
|
| 135 |
+
# Cross-val predictions for detailed report
|
| 136 |
+
y_prob_best = cross_val_predict(
|
| 137 |
+
best_model, X_scaled, y,
|
| 138 |
+
cv=cv, method="predict_proba",
|
| 139 |
+
)[:, 1]
|
| 140 |
+
y_pred_best = (y_prob_best > 0.5).astype(int)
|
| 141 |
+
|
| 142 |
+
evaluate_predictions(
|
| 143 |
+
y, y_pred_best, y_prob_best,
|
| 144 |
+
title=f"Best: {best_name}",
|
| 145 |
+
)
|
| 146 |
+
|
| 147 |
+
# ── Train final model on ALL data ──────────────
|
| 148 |
+
print(f"\nTraining final {best_name} on all data...")
|
| 149 |
+
best_model.fit(X_scaled, y)
|
| 150 |
+
|
| 151 |
+
# ── Feature importance ─────────────────────────
|
| 152 |
+
if hasattr(best_model, "feature_importances_"):
|
| 153 |
+
importances = best_model.feature_importances_
|
| 154 |
+
top_features = sorted(
|
| 155 |
+
zip(feature_cols, importances),
|
| 156 |
+
key=lambda x: x[1],
|
| 157 |
+
reverse=True,
|
| 158 |
+
)
|
| 159 |
+
print("\nTop 10 features:")
|
| 160 |
+
for fname, imp in top_features[:10]:
|
| 161 |
+
bar = "█" * int(imp * 100)
|
| 162 |
+
print(f" {fname:<30} {imp:.4f} {bar}")
|
| 163 |
+
|
| 164 |
+
# ── Save artifacts ─────────────────────────────
|
| 165 |
+
model_path = models_dir / "auris_classifier_v1.pkl"
|
| 166 |
+
scaler_path = models_dir / "feature_scaler_v1.pkl"
|
| 167 |
+
columns_path = models_dir / "feature_columns_v1.json"
|
| 168 |
+
|
| 169 |
+
with open(model_path, "wb") as f:
|
| 170 |
+
pickle.dump(best_model, f)
|
| 171 |
+
with open(scaler_path, "wb") as f:
|
| 172 |
+
pickle.dump(scaler, f)
|
| 173 |
+
with open(columns_path, "w") as f:
|
| 174 |
+
json.dump(feature_cols, f, indent=2)
|
| 175 |
+
|
| 176 |
+
print(f"\nSaved:")
|
| 177 |
+
print(f" Model: {model_path}")
|
| 178 |
+
print(f" Scaler: {scaler_path}")
|
| 179 |
+
print(f" Columns: {columns_path}")
|
| 180 |
+
|
| 181 |
+
return {
|
| 182 |
+
"best_model": best_name,
|
| 183 |
+
"best_auc": best_auc,
|
| 184 |
+
"results": results,
|
| 185 |
+
"model_path": str(model_path),
|
| 186 |
+
}
|
| 187 |
+
|
| 188 |
+
|
| 189 |
+
def _build_candidates() -> list[tuple[str, object]]:
|
| 190 |
+
"""Build list of classifier candidates to evaluate."""
|
| 191 |
+
candidates = [
|
| 192 |
+
(
|
| 193 |
+
"RandomForest",
|
| 194 |
+
RandomForestClassifier(
|
| 195 |
+
n_estimators=300,
|
| 196 |
+
max_depth=20,
|
| 197 |
+
min_samples_leaf=5,
|
| 198 |
+
class_weight="balanced",
|
| 199 |
+
random_state=42,
|
| 200 |
+
n_jobs=-1,
|
| 201 |
+
),
|
| 202 |
+
),
|
| 203 |
+
(
|
| 204 |
+
"GradientBoosting",
|
| 205 |
+
GradientBoostingClassifier(
|
| 206 |
+
n_estimators=200,
|
| 207 |
+
max_depth=6,
|
| 208 |
+
learning_rate=0.1,
|
| 209 |
+
subsample=0.8,
|
| 210 |
+
random_state=42,
|
| 211 |
+
),
|
| 212 |
+
),
|
| 213 |
+
]
|
| 214 |
+
|
| 215 |
+
if HAS_LGBM:
|
| 216 |
+
candidates.append((
|
| 217 |
+
"LightGBM",
|
| 218 |
+
lgb.LGBMClassifier(
|
| 219 |
+
n_estimators=300,
|
| 220 |
+
max_depth=8,
|
| 221 |
+
learning_rate=0.05,
|
| 222 |
+
num_leaves=31,
|
| 223 |
+
subsample=0.8,
|
| 224 |
+
colsample_bytree=0.8,
|
| 225 |
+
class_weight="balanced",
|
| 226 |
+
random_state=42,
|
| 227 |
+
verbose=-1,
|
| 228 |
+
),
|
| 229 |
+
))
|
| 230 |
+
|
| 231 |
+
return candidates
|
| 232 |
+
|
| 233 |
+
|
| 234 |
+
if __name__ == "__main__":
|
| 235 |
+
csv_path = sys.argv[1] if len(sys.argv) > 1 else "data/sonics/features.csv"
|
| 236 |
+
model_dir = sys.argv[2] if len(sys.argv) > 2 else "models"
|
| 237 |
+
train(csv_path, model_dir)
|