docs: sync documentation with codebase reality

- Fix test count 127→142+ (index.md)
- Fix OpenAI model gpt-5.1→gpt-5 to match config.py (CLAUDE.md)
- Mark phases 13-14 as COMPLETE (roadmap.md)
- Auto-format 2 test files (ruff)

CLAUDE.md

@@ -100,7 +100,7 @@ DeepBonerError (base)
 
 Given the rapid advancements, as of November 29, 2025, the DeepBoner project uses the following default LLM models in its configuration (`src/utils/config.py`):
 
-- **OpenAI:** `gpt-5.1`
+- **OpenAI:** `gpt-5`
   - Current flagship model (November 2025). Requires Tier 5 access.
 - **Anthropic:** `claude-sonnet-4-5-20250929`
   - This is the mid-range Claude 4.5 model, released on September 29, 2025.

docs/implementation/roadmap.md

@@ -206,8 +206,8 @@ Structured Research Report
 ### Hackathon Integration (Phases 12-14)
 
 12. **[Phase 12 Spec: MCP Server](12_phase_mcp_server.md)** ✅ COMPLETE
-13. **[Phase 13 Spec: Modal Pipeline](13_phase_modal_integration.md)** 📝 P1 - $2,500
-14. **[Phase 14 Spec: Demo & Submission](14_phase_demo_submission.md)** 📝 P0 - REQUIRED
+13. **[Phase 13 Spec: Modal Pipeline](13_phase_modal_integration.md)** ✅ COMPLETE
+14. **[Phase 14 Spec: Demo & Submission](14_phase_demo_submission.md)** ✅ COMPLETE
 
 ---
 
@@ -227,10 +227,10 @@ Structured Research Report
 | Phase 10: ClinicalTrials | ✅ COMPLETE | ClinicalTrials.gov API |
 | Phase 11: Europe PMC | ✅ COMPLETE | Preprint search |
 | Phase 12: MCP Server | ✅ COMPLETE | MCP protocol integration |
-| Phase 13: Modal Pipeline | 📝 SPEC READY | Sandboxed code execution |
-| Phase 14: Demo & Submit | 📝 SPEC READY | Hackathon submission |
+| Phase 13: Modal Pipeline | ✅ COMPLETE | Sandboxed code execution |
+| Phase 14: Demo & Submit | ✅ COMPLETE | Hackathon submission |
 
-*Phases 1-12 COMPLETE. Phases 13-14 for hackathon prizes.*
+*Phases 1-14 COMPLETE.*
 
 ---
 

docs/index.md

@@ -103,5 +103,5 @@ User Question → Research Agent (Orchestrator)
 |-------|--------|
 | Phases 1-14 | ✅ COMPLETE |
 
-**Tests**: 127 passing, 0 warnings
+**Tests**: 142+ passing, 0 warnings
 **Known Issues**: See [Active Bugs](bugs/ACTIVE_BUGS.md)