| from setuptools import setup, find_packages |
|
|
| with open("README.md", "r", encoding="utf-8") as fh: |
| long_description = fh.read() |
|
|
| setup( |
| name="nb-transformer", |
| version="1.0.0", |
| author="Valentine Svensson", |
| author_email="valentine.svensson@gmail.com", |
| description="Fast Negative Binomial GLM parameter estimation using transformers - a DESeq2 replacement", |
| long_description=long_description, |
| long_description_content_type="text/markdown", |
| url="https://huggingface.co/valsv/nb-transformer", |
| packages=find_packages(), |
| classifiers=[ |
| "Development Status :: 5 - Production/Stable", |
| "Intended Audience :: Science/Research", |
| "Topic :: Scientific/Engineering :: Bio-Informatics", |
| "Topic :: Scientific/Engineering :: Artificial Intelligence", |
| "License :: OSI Approved :: MIT License", |
| "Programming Language :: Python :: 3", |
| "Programming Language :: Python :: 3.8", |
| "Programming Language :: Python :: 3.9", |
| "Programming Language :: Python :: 3.10", |
| ], |
| python_requires=">=3.8", |
| install_requires=[ |
| "torch>=1.10.0", |
| "pytorch-lightning>=1.8.0", |
| "numpy>=1.21.0", |
| "scipy>=1.7.0", |
| "tensorboard>=2.8.0", |
| ], |
| extras_require={ |
| "dev": [ |
| "pytest>=6.2.0", |
| "flake8>=4.0.0", |
| "black>=21.0.0", |
| "mypy>=0.910", |
| ], |
| "analysis": [ |
| "pandas>=1.3.0", |
| "pyarrow>=5.0.0", |
| "matplotlib>=3.4.0", |
| "scikit-learn>=1.0.0", |
| "statsmodels>=0.13.0", |
| ], |
| }, |
| entry_points={ |
| "console_scripts": [ |
| "train-nb-transformer=nb_transformer.train:main", |
| ], |
| }, |
| ) |
