Christina Theodoris's picture

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Christina Theodoris

ctheodoris

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Recent Activity

new activity about 17 hours ago

ctheodoris/Geneformer:Setting max_layers_to_freeze overrun in MTLClassifier

new activity 1 day ago

ctheodoris/Geneformer:A MTLClassifier.load_and_evaluate_test_model error

new activity 11 days ago

ctheodoris/Geneformer:Issue reproducing TTN detection counts in In Silico Treatment Analysis

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Organizations

New activity in ctheodoris/Geneformer about 17 hours ago

Setting max_layers_to_freeze overrun in MTLClassifier

#581 opened 2 days ago by

New activity in ctheodoris/Geneformer 1 day ago

A MTLClassifier.load_and_evaluate_test_model error

#580 opened 3 days ago by

New activity in ctheodoris/Geneformer 11 days ago

Issue reproducing TTN detection counts in In Silico Treatment Analysis

#579 opened 14 days ago by

New activity in ctheodoris/Geneformer 15 days ago

Genecorpus 30 M annotation

#578 opened 16 days ago by

New activity in ctheodoris/Geneformer 21 days ago

GPU requirements

#577 opened 21 days ago by

New activity in ctheodoris/Geneformer 28 days ago

Considerations on Gene symbol and Ensembl ID mapping

#576 opened 29 days ago by

New activity in ctheodoris/Geneformer about 1 month ago

Ensembl gene ID version used in Geneformer (ENSG)

#575 opened about 1 month ago by

use geneformer for mouse data

#574 opened about 1 month ago by

New activity in ctheodoris/Geneformer about 2 months ago

Clarification on label mapping for cardiomyopathy classifier (nf, dcm, hcm)

#571 opened 2 months ago by

New activity in ctheodoris/Genecorpus-30M about 2 months ago

median computation

#26 opened 12 months ago by

New activity in ctheodoris/Geneformer about 2 months ago

problem with get_train_sampler()

#572 opened 2 months ago by

problem when running gene_classification.ipynb

#573 opened 2 months ago by

New activity in ctheodoris/Geneformer 3 months ago

Genecorpus-95M availability

#526 opened 9 months ago by

Clarification on tuning "frozen layers" hyperparameter with RayTune

#570 opened 3 months ago by

TypeError in classifier.py

#568 opened 3 months ago by

Fix TypeError in make_perturbation_batch_special

#567 opened 3 months ago by

Embedding bulk RNA-seq

#569 opened 3 months ago by

New activity in ctheodoris/Geneformer 4 months ago

Finetuning vs Pretraining Speed

#566 opened 4 months ago by

Bug in tokenizer.py: tokenize_loom

#565 opened 4 months ago by

Setting max_ncells=None in EmbExtractor causes TypeError

#564 opened 4 months ago by