problem_id string | source string | task_type string | in_source_id string | prompt string | golden_diff string | verification_info string |
|---|---|---|---|---|---|---|
gh_patches_debug_36408 | rasdani/github-patches | git_diff | mne-tools__mne-bids-74 | We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
Remove .gz extension for fif: It's no longer part of the validator
Throughout the current state of MNE BIDS, the file ending `.gz` is used as an identifier for FIF files:
https://github.com/mne-tools/mne-b... | diff --git a/mne_bids/io.py b/mne_bids/io.py
--- a/mne_bids/io.py
+++ b/mne_bids/io.py
@@ -9,7 +9,7 @@
from mne import io
import os
-ALLOWED_EXTENSIONS = ['.con', '.sqd', '.fif', '.gz', '.pdf', '.ds']
+ALLOWED_EXTENSIONS = ['.con', '.sqd', '.fif', '.pdf', '.ds']
def _parse_ext(raw_fname, verbose=False):
@@ -37... | {"golden_diff": "diff --git a/mne_bids/io.py b/mne_bids/io.py\n--- a/mne_bids/io.py\n+++ b/mne_bids/io.py\n@@ -9,7 +9,7 @@\n from mne import io\n import os\n \n-ALLOWED_EXTENSIONS = ['.con', '.sqd', '.fif', '.gz', '.pdf', '.ds']\n+ALLOWED_EXTENSIONS = ['.con', '.sqd', '.fif', '.pdf', '.ds']\n \n \n def _parse_ext(raw_f... |
gh_patches_debug_32737 | rasdani/github-patches | git_diff | dask__dask-586 | We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
Additional improvement for da.image.imread
I think following 2 improvements make the function better.
#### 1. Allow custom `imread` function.
Some prefer `opencv` which reads color in BGR order, otherwise `s... | diff --git a/dask/array/image.py b/dask/array/image.py
--- a/dask/array/image.py
+++ b/dask/array/image.py
@@ -13,7 +13,7 @@
return x[None, ...]
-def imread(filename):
+def imread(filename, imread=None, preprocess=None):
""" Read a stack of images into a dask array
Parameters
@@ -21,6 +21,13 @@
... | {"golden_diff": "diff --git a/dask/array/image.py b/dask/array/image.py\n--- a/dask/array/image.py\n+++ b/dask/array/image.py\n@@ -13,7 +13,7 @@\n return x[None, ...]\n \n \n-def imread(filename):\n+def imread(filename, imread=None, preprocess=None):\n \"\"\" Read a stack of images into a dask array\n \n Pa... |
gh_patches_debug_19722 | rasdani/github-patches | git_diff | iterative__dvc-7283 | We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
'None' does not contain DVC directory
```console
cd "$(mktemp -d)"
dvc add foo # or any other command
```
--- END ISSUE ---
Below are some code segments, each from a relevant file. One or more of thes... | diff --git a/dvc/repo/__init__.py b/dvc/repo/__init__.py
--- a/dvc/repo/__init__.py
+++ b/dvc/repo/__init__.py
@@ -314,8 +314,8 @@
def find_root(cls, root=None, fs=None) -> str:
from dvc.fs.local import LocalFileSystem, localfs
- root_dir = os.path.realpath(root or os.curdir)
- _fs = fs
+ ... | {"golden_diff": "diff --git a/dvc/repo/__init__.py b/dvc/repo/__init__.py\n--- a/dvc/repo/__init__.py\n+++ b/dvc/repo/__init__.py\n@@ -314,8 +314,8 @@\n def find_root(cls, root=None, fs=None) -> str:\n from dvc.fs.local import LocalFileSystem, localfs\n \n- root_dir = os.path.realpath(root or os.curd... |
gh_patches_debug_233 | rasdani/github-patches | git_diff | learningequality__kolibri-6355 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/kolibri/core/content/serializers.py b/kolibri/core/content/serializers.py\n--- a/kolib(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/kolibri/core/content/serializers.py b/kolibri/core/content/seriali(...TRUNCATED) |
gh_patches_debug_65930 | rasdani/github-patches | git_diff | iterative__dvc-2882 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/dvc/remote/base.py b/dvc/remote/base.py\n--- a/dvc/remote/base.py\n+++ b/dvc/remote/ba(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/dvc/remote/base.py b/dvc/remote/base.py\\n--- a/dvc/remote/base.py(...TRUNCATED) |
gh_patches_debug_60514 | rasdani/github-patches | git_diff | kedro-org__kedro-1706 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/features/steps/cli_steps.py b/features/steps/cli_steps.py\n--- a/features/steps/cli_st(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/features/steps/cli_steps.py b/features/steps/cli_steps.py\\n--- a/(...TRUNCATED) |
gh_patches_debug_41327 | rasdani/github-patches | git_diff | ibis-project__ibis-1988 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/ibis/pyspark/compiler.py b/ibis/pyspark/compiler.py\n--- a/ibis/pyspark/compiler.py\n+(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/ibis/pyspark/compiler.py b/ibis/pyspark/compiler.py\\n--- a/ibis/p(...TRUNCATED) |
gh_patches_debug_3876 | rasdani/github-patches | git_diff | xorbitsai__inference-299 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/examples/gradio_chatinterface.py b/examples/gradio_chatinterface.py\n--- a/examples/gr(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/examples/gradio_chatinterface.py b/examples/gradio_chatinterface.p(...TRUNCATED) |
gh_patches_debug_57507 | rasdani/github-patches | git_diff | scikit-image__scikit-image-7095 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/skimage/morphology/_skeletonize.py b/skimage/morphology/_skeletonize.py\n--- a/skimage(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/skimage/morphology/_skeletonize.py b/skimage/morphology/_skeletoni(...TRUNCATED) |
gh_patches_debug_29709 | rasdani/github-patches | git_diff | opsdroid__opsdroid-1306 | "We are currently solving the following issue within our repository. Here is the issue text:\n--- BE(...TRUNCATED) | "diff --git a/opsdroid/connector/slack/__init__.py b/opsdroid/connector/slack/__init__.py\n--- a/ops(...TRUNCATED) | "{\"golden_diff\": \"diff --git a/opsdroid/connector/slack/__init__.py b/opsdroid/connector/slack/__(...TRUNCATED) |
End of preview. Expand in Data Studio
import re
import json
from datasets import load_dataset
PROMPT_TEMPLATE = """\
We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
{issue}
--- END ISSUE ---
Below are some code segments, each from a relevant file. One or more of these files may contain bugs.
--- BEGIN FILES ---
{file_context}
--- END FILES ---
Please first localize the bug based on the issue statement, and then generate a patch according to the `git diff` format fenced by three backticks.
Here is an example:
\```diff
diff --git a/examples/server_async.py b/examples/server_async.py
--- a/examples/server_async.py
+++ b/examples/server_async.py
@@ -313,4 +313,4 @@
if __name__ == "__main__":
- asyncio.run(run_async_server("."), debug=True)
+ asyncio.run(run_async_server(), debug=True)
diff --git a/examples/server_sync.py b/examples/server_sync.py
--- a/examples/server_sync.py
+++ b/examples/server_sync.py
@@ -313,5 +313,5 @@
if __name__ == "__main__":
- server = run_sync_server(".")
+ server = run_sync_server()
server.shutdown()
\```
"""
# ds = load_dataset("rasdani/github-patches-10k-sample-sorted", split="train")
ds = load_dataset("rasdani/github-patches-decontaminated", split="train")
def prepend_line_numbers(file_content: str) -> str:
if not file_content:
return ""
lines = file_content.split('\n')
lines = [f"{i+1} {line}" for i, line in enumerate(lines)]
ret = '\n'.join(lines)
ret = ret.strip() + "\n"
return ret
def normalize_diff(diff_text: str) -> str:
diff_text = re.sub(r'(?m)^index [^\n]*\n', '', diff_text)
diff_text = re.sub(r'(?m)^(@@[^@]*@@).*', r'\1', diff_text)
diff_text = diff_text.strip() + "\n"
return diff_text
def filter_diff_by_files(diff: str, touched_files: set) -> str:
"""Filter a git diff to only include changes for specific files."""
if not touched_files:
return diff
lines = diff.split('\n')
filtered_lines = []
include_section = False
for line in lines:
if line.startswith('diff --git'):
# Check if this file should be included
# Extract the file path from "diff --git a/path b/path"
match = re.match(r'diff --git a/(.*?) b/', line)
if match:
file_path = match.group(1)
include_section = file_path in touched_files
else:
include_section = False
if include_section:
filtered_lines.append(line)
return '\n'.join(filtered_lines)
def create_golden_diff(example):
before_paths = [b["path"] for b in example["before_files"]]
after_paths = [a["path"] for a in example["after_files"]]
touched_files = set(before_paths) | set(after_paths)
filtered_diff = filter_diff_by_files(example["pr_diff"], touched_files)
golden_diff = normalize_diff(filtered_diff)
for path in touched_files:
assert path in golden_diff, f"Path {path} not found in golden diff {golden_diff}"
verification_info_dict = {
"golden_diff": golden_diff,
"issue": example["issue"],
"before_files": example["before_files"],
"after_files": example["after_files"],
}
verification_info = json.dumps(verification_info_dict)
return {"golden_diff": golden_diff, "verification_info": verification_info}
def create_prompt(example):
golden_diff = example["golden_diff"]
issue = example["issue"]
before_files = example["before_files"]
file_context = [f"Path: `{x['path']}`\nContent:\n```\n{prepend_line_numbers(x['content'])}```" for x in before_files]
file_context = "\n\n".join(file_context)
prompt = PROMPT_TEMPLATE.format(issue=issue, file_context=file_context, golden_diff=golden_diff)
# print(prompt)
# print("="*100)
return {"prompt": prompt}
ds_up = ds.map(lambda x, idx: {"problem_id": f"gh_patches_debug_{idx}"}, with_indices=True)
ds_up = ds_up.map(lambda x: {"source": "rasdani/github-patches", "task_type": "git_diff"})
ds_up = ds_up.map(create_golden_diff, num_proc=10)
# example = ds_up[0]
# create_prompt(example)
ds_up = ds_up.map(create_prompt, num_proc=10)
ds_up = ds_up.select_columns(["problem_id", "source", "task_type", "in_source_id", "prompt", "golden_diff", "verification_info"])
# ds_up.push_to_hub("rasdani/github-patches-debug")
# ds_up.push_to_hub("rasdani/github-patches-debug-genesys")
ds_up = ds_up.shuffle(seed=42)
ds_up.push_to_hub("rasdani/github-patches-genesys")
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